Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GAFBPMNC_45 | 73234 | 74199 | CfxA4 | ARO:3003005 | CfxA4 | 99.69 | 100.00 | AY769933.1 |
| GAFBPMNC_17 | 9224 | 11149 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| GAFBPMNC_58 | 67 | 867 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GAFBPMNC_45 | 73234 | 74199 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| GAFBPMNC_17 | 9224 | 11149 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| GAFBPMNC_58 | 67 | 867 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GAFBPMNC_45 | 73237 | 74199 | cfxA4 | extended-spectrum class A beta-lactamase CfxA4 | BLASTX | 99.69 | 100.00 | WP_057280848.1 |
| GAFBPMNC_17 | 9224 | 11146 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| GAFBPMNC_58 | 70 | 867 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GAFBPMNC_1 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_2 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_3 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_4 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_5 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_6 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_7 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_8 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_9 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_10 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_11 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_12 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_13 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_14 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_15 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_16 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_17 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_18 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_19 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_20 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_21 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_22 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_23 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_24 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_25 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_26 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_27 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_28 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_29 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_30 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_31 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_32 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_33 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_34 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_35 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_36 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_37 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_38 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_39 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_40 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_41 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_42 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_43 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_44 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_45 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_46 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_47 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_48 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_49 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_51 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_52 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_53 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_54 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_55 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_56 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_57 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_58 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_59 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_60 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_61 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_62 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_63 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_64 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_65 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_66 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_67 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_68 | 1.0 | 0.0 | 1.0 |
| GAFBPMNC_77 | 0.0 | 1.0 | 0.0 |
| GAFBPMNC_78 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GAFBPMNC_25 | 48904 | 53453 | False | Unknown | VOG5095, |
Phigaro v2.4.0 (Database: Jan. 2024 release)