Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IMDEJAEC_126 | 28681 | 27974 | WalR | 2.84e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| IMDEJAEC_71 | 255983 | 256180 | CspR | 5.24e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| IMDEJAEC_71 | 255983 | 256177 | CspA | 2.56e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IMDEJAEC_11 | 1.0 | 0.0 | 1.0 |
| IMDEJAEC_22 | 1.0 | 0.0 | 1.0 |
| IMDEJAEC_33 | 0.0 | 1.0 | 0.0 |
| IMDEJAEC_44 | 0.0 | 1.0 | 0.0 |
| IMDEJAEC_55 | 1.0 | 0.0 | 1.0 |
| IMDEJAEC_56 | 1.0 | 0.0 | 1.0 |
| IMDEJAEC_57 | 1.0 | 0.0 | 1.0 |
| IMDEJAEC_58 | 1.0 | 0.0 | 1.0 |
| IMDEJAEC_59 | 1.0 | 0.0 | 1.0 |
| IMDEJAEC_60 | 0.0 | 1.0 | 0.0 |
| IMDEJAEC_71 | 0.0 | 1.0 | 0.0 |
| IMDEJAEC_82 | 1.0 | 0.0 | 1.0 |
| IMDEJAEC_93 | 0.0 | 1.0 | 0.0 |
| IMDEJAEC_104 | 0.0 | 1.0 | 0.0 |
| IMDEJAEC_115 | 0.0 | 1.0 | 0.0 |
| IMDEJAEC_126 | 0.0 | 1.0 | 0.0 |
| IMDEJAEC_137 | 0.0 | 1.0 | 0.0 |
| IMDEJAEC_148 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IMDEJAEC_115 | 73729 | 78024 | False | Siphoviridae | VOG0322, VOG0322, VOG6545, VOG0514, VOG4799 |
| IMDEJAEC_115 | 81344 | 98956 | False | Siphoviridae | VOG0198, VOG3477, VOG10597, VOG8681, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586, VOG1125, VOG9629, VOG9258 |
| IMDEJAEC_137 | 1568 | 17053 | False | Siphoviridae | VOG3462, VOG0801, VOG4545, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841 |
Phigaro v2.4.0 (Database: Jan. 2024 release)