Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
HNCGMDFM_1317961780321WalR1.49e-114transcriptional regulatory protein84.25100.00EPH95667
HNCGMDFM_338646286268CspR5.45e-30cold shock protein84.6198.48AAO82613
HNCGMDFM_338646286265CspA8.35e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
HNCGMDFM_14752486183rep28936 / 936100.00CP005948
HNCGMDFM_14665947694repUS731101 / 110194.73CP002654

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
HNCGMDFM_110.01.00.0
HNCGMDFM_220.01.00.0
HNCGMDFM_330.01.00.0
HNCGMDFM_440.01.00.0
HNCGMDFM_550.01.00.0
HNCGMDFM_660.01.00.0
HNCGMDFM_770.01.00.0
HNCGMDFM_880.01.00.0
HNCGMDFM_990.01.00.0
HNCGMDFM_1100.01.00.0
HNCGMDFM_1110.01.00.0
HNCGMDFM_1211.00.01.0
HNCGMDFM_1220.01.00.0
HNCGMDFM_1230.01.00.0
HNCGMDFM_1241.00.01.0
HNCGMDFM_1250.01.00.0
HNCGMDFM_1260.01.00.0
HNCGMDFM_1271.00.01.0
HNCGMDFM_1281.00.01.0
HNCGMDFM_1290.01.00.0
HNCGMDFM_1301.00.01.0
HNCGMDFM_1310.01.00.0
HNCGMDFM_1321.00.01.0
HNCGMDFM_1331.00.01.0
HNCGMDFM_1340.01.00.0
HNCGMDFM_1351.00.01.0
HNCGMDFM_1361.00.01.0
HNCGMDFM_1371.00.01.0
HNCGMDFM_1380.01.00.0
HNCGMDFM_1391.00.01.0
HNCGMDFM_1401.00.01.0
HNCGMDFM_1410.01.00.0
HNCGMDFM_1420.01.00.0
HNCGMDFM_1430.01.00.0
HNCGMDFM_1440.01.00.0
HNCGMDFM_1451.00.01.0
HNCGMDFM_1461.00.01.0
HNCGMDFM_1471.00.01.0
HNCGMDFM_1481.00.01.0
HNCGMDFM_1490.01.00.0
HNCGMDFM_1501.00.01.0
HNCGMDFM_1511.00.01.0
HNCGMDFM_1520.01.00.0
HNCGMDFM_1530.01.00.0
HNCGMDFM_1541.00.01.0
HNCGMDFM_1551.00.01.0
HNCGMDFM_1561.00.01.0
HNCGMDFM_1571.00.01.0
HNCGMDFM_1581.00.01.0
HNCGMDFM_1591.00.01.0
HNCGMDFM_1601.00.01.0
HNCGMDFM_1610.01.00.0
HNCGMDFM_1621.00.01.0
HNCGMDFM_1631.00.01.0
HNCGMDFM_1640.01.00.0
HNCGMDFM_1651.00.01.0
HNCGMDFM_1661.00.01.0
HNCGMDFM_1671.00.01.0
HNCGMDFM_1681.00.01.0
HNCGMDFM_1691.00.01.0
HNCGMDFM_1701.00.01.0
HNCGMDFM_1711.00.01.0
HNCGMDFM_1731.00.01.0
HNCGMDFM_1741.00.01.0
HNCGMDFM_1750.01.00.0
HNCGMDFM_1761.00.01.0
HNCGMDFM_1771.00.01.0
HNCGMDFM_1781.00.01.0
HNCGMDFM_1791.00.01.0
HNCGMDFM_1800.01.00.0
HNCGMDFM_1821.00.01.0
HNCGMDFM_1831.00.01.0
HNCGMDFM_1841.00.01.0
HNCGMDFM_1851.00.01.0
HNCGMDFM_1860.01.00.0
HNCGMDFM_1871.00.01.0
HNCGMDFM_1881.00.01.0
HNCGMDFM_1891.00.01.0
HNCGMDFM_1911.00.01.0
HNCGMDFM_1921.00.01.0
HNCGMDFM_1931.00.01.0
HNCGMDFM_1941.00.01.0
HNCGMDFM_1951.00.01.0
HNCGMDFM_1970.01.00.0
HNCGMDFM_2080.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
HNCGMDFM_153442028594FalseSiphoviridaeVOG0044, VOG3643, VOG4414, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605, VOG4599
HNCGMDFM_164151633173121FalseSiphoviridaeVOG1637, VOG8294, VOG4856, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG1183, VOG5616
HNCGMDFM_164176855201918FalseSiphoviridaeVOG0189, VOG5046, VOG0186, VOG1309, VOG0181, VOG6495, VOG6495, VOG4602, VOG7508, VOG7508, VOG0985, VOG1788, VOG0275, VOG0198, VOG0204, VOG4553, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements