Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 2 | 7 | 7.35 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DDCMJOMI_43 | 388586 | 389962 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.07 | 100.00 | X08034 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DDCMJOMI_43 | 388586 | 389956 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.21 | 99.78 | WP_003242953.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DDCMJOMI_53 | 507383 | 508253 | capB | 0.0 | Capsule | Immune modulation | 82.80 | 73.60 | NP_391471 |
| DDCMJOMI_53 | 508462 | 508911 | capC | 2.74e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DDCMJOMI_125 | 28154 | 27018 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| DDCMJOMI_22 | 4359 | 5228 | pdxS | 1.36e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| DDCMJOMI_64 | 486433 | 485657 | CodY | 7.12e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| DDCMJOMI_93 | 255038 | 255430 | spxA1 | 6.45e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| DDCMJOMI_73 | 81398 | 81201 | CspA | 2.50e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| DDCMJOMI_93 | 39441 | 39247 | CspB | 6.14e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| DDCMJOMI_73 | 81398 | 81204 | CspR | 3.27e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| DDCMJOMI_104 | 157083 | 157955 | lipA (SAUSA300_0829) | 9.48e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DDCMJOMI_11 | 0.0 | 1.0 | 0.0 |
| DDCMJOMI_22 | 0.0 | 1.0 | 0.0 |
| DDCMJOMI_33 | 0.0 | 1.0 | 0.0 |
| DDCMJOMI_39 | 1.0 | 0.0 | 1.0 |
| DDCMJOMI_43 | 0.0 | 1.0 | 0.0 |
| DDCMJOMI_53 | 0.0 | 1.0 | 0.0 |
| DDCMJOMI_64 | 0.0 | 1.0 | 0.0 |
| DDCMJOMI_73 | 0.0 | 1.0 | 0.0 |
| DDCMJOMI_83 | 0.0 | 1.0 | 0.0 |
| DDCMJOMI_93 | 0.0 | 1.0 | 0.0 |
| DDCMJOMI_104 | 0.0 | 1.0 | 0.0 |
| DDCMJOMI_114 | 0.0 | 1.0 | 0.0 |
| DDCMJOMI_125 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DDCMJOMI_64 | 269168 | 289357 | False | Siphoviridae | VOG7718, VOG3390, VOG5008, VOG8610, VOG0275, VOG9312, VOG4910, VOG3389, VOG5042, VOG9712 |
| DDCMJOMI_83 | 306360 | 332556 | False | Myoviridae | VOG0753, VOG4705, VOG3390, VOG7718, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG10055, VOG0749, VOG4685, VOG4773, VOG10227, VOG0796, VOG5447, VOG4861, VOG0189 |
Phigaro v2.4.0 (Database: Jan. 2024 release)