Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 4 | 16.88 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KOIMJNAJ_1 | 2610069 | 2610923 | aadK | ARO:3002627 | aadK | 98.24 | 100.00 | AL009126.1 |
| KOIMJNAJ_1 | 2591400 | 2592602 | blt | ARO:3003006 | blt | 99.00 | 100.00 | L32599.1 |
| KOIMJNAJ_1 | 2364248 | 2365417 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| KOIMJNAJ_1 | 1387475 | 1387792 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| KOIMJNAJ_1 | 1387137 | 1387475 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| KOIMJNAJ_1 | 924683 | 927253 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| KOIMJNAJ_1 | 633687 | 635333 | vmlR | ARO:3004476 | vmlR | 98.54 | 100.18 | NC_000964.3 |
| KOIMJNAJ_1 | 392557 | 393150 | tmrB | ARO:3003059 | tmrB | 100.00 | 100.00 | AL009126.3 |
| KOIMJNAJ_1 | 342082 | 343515 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.00 | JYFL01000006.1 |
| KOIMJNAJ_1 | 329268 | 330188 | mphK | ARO:3004541 | mphK | 97.71 | 100.00 | CP010314.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KOIMJNAJ_1 | 4071277 | 4072653 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 98.84 | 100.00 | X08034 |
| KOIMJNAJ_1 | 2610071 | 2610923 | aadK | Streptomycin | 98.71 | 99.77 | M26879 |
| KOIMJNAJ_1 | 329268 | 330188 | mph(K) | Spiramycin, Telithromycin | 97.72 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KOIMJNAJ_1 | 4071280 | 4072653 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_003242953.1 |
| KOIMJNAJ_1 | 633690 | 635333 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.54 | 100.00 | WP_003234144.1 |
| KOIMJNAJ_1 | 2610072 | 2610923 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| KOIMJNAJ_1 | 329268 | 330185 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.71 | 100.00 | WP_003246254.1 |
| KOIMJNAJ_1 | 4068806 | 4069324 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| KOIMJNAJ_1 | 2066659 | 2069256 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.60 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KOIMJNAJ_1 | 3171065 | 3172003 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.68 | 100.00 | NP_391077 |
| KOIMJNAJ_1 | 3586444 | 3587625 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| KOIMJNAJ_1 | 3172031 | 3173650 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.26 | 100.00 | NP_391078 |
| KOIMJNAJ_1 | 3174901 | 3175686 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.24 | 100.00 | NP_391080 |
| KOIMJNAJ_1 | 2162802 | 2163443 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.22 | 100.00 | NP_390062 |
| KOIMJNAJ_1 | 3584819 | 3585961 | capA | 0.0 | Capsule | Immune modulation | 98.95 | 100.00 | NP_391469 |
| KOIMJNAJ_1 | 3173679 | 3174875 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.91 | 100.00 | NP_391079 |
| KOIMJNAJ_1 | 2019717 | 2021480 | dep/capD | 0.0 | Capsule | Immune modulation | 98.87 | 100.00 | NP_389723 |
| KOIMJNAJ_1 | 3163910 | 3171045 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.81 | 99.99 | NP_391076 |
| KOIMJNAJ_1 | 3585980 | 3586429 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KOIMJNAJ_1 | 132392 | 133528 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| KOIMJNAJ_1 | 18664 | 19533 | pdxS | 3.04e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| KOIMJNAJ_1 | 1697340 | 1698116 | CodY | 3.33e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| KOIMJNAJ_1 | 3437196 | 3437765 | ClpP | 2.47e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KOIMJNAJ_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KOIMJNAJ_1 | 168740 | 175524 | False | Siphoviridae | VOG4603, VOG8241, VOG3549, VOG1878, VOG0083, VOG1309, VOG1292 |
| KOIMJNAJ_1 | 183612 | 212197 | False | Myoviridae | VOG6242, VOG7983, VOG4618, VOG4567, VOG1328, VOG9315, VOG4773, VOG4688, VOG4685, VOG0749, VOG4589, VOG4870, VOG10055, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4691, VOG4691, VOG4862, VOG0906, VOG7718, VOG3390, VOG7895 |
| KOIMJNAJ_1 | 1330094 | 1357335 | False | Myoviridae | VOG4602, VOG9667, VOG3490, VOG0189, VOG4861, VOG5447, VOG0796, VOG9315, VOG4773, VOG4685, VOG4685, VOG0749, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG4612, VOG4705 |
| KOIMJNAJ_1 | 2542766 | 2574552 | False | Myoviridae | VOG7718, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG10055, VOG4870, VOG4589, VOG0749, VOG4685, VOG4688, VOG4773, VOG9315, VOG0796, VOG7060, VOG4673, VOG4567, VOG4693, VOG0189, VOG11060, VOG1309 |
Phigaro v2.4.0 (Database: Jan. 2024 release)