Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CAIKOPNP_112 | 44093 | 43389 | WalR | 7.50e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| CAIKOPNP_222 | 13988 | 13794 | CspR | 9.21e-31 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| CAIKOPNP_222 | 13988 | 13791 | CspA | 1.41e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CAIKOPNP_22 | 2652 | 3581 | rep28 | 930 / 930 | 98.28 | CP003162 |
| CAIKOPNP_45 | 1 | 662 | rep38 | 662 / 903 | 98.04 | CP005943 |
| CAIKOPNP_243 | 4433 | 5533 | repUS73 | 1101 / 1101 | 91.28 | CP002654 |
| CAIKOPNP_60 | 379 | 1303 | repUS64 | 930 / 954 | 85.48 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CAIKOPNP_1 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_2 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_3 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_4 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_5 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_6 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_7 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_8 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_10 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_13 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_17 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_18 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_20 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_21 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_22 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_24 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_25 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_27 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_28 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_29 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_30 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_31 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_32 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_33 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_34 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_35 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_38 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_39 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_40 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_42 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_43 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_45 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_46 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_47 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_48 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_49 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_51 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_52 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_53 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_55 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_57 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_58 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_59 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_60 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_61 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_63 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_65 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_66 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_67 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_68 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_69 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_70 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_71 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_73 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_74 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_79 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_81 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_82 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_85 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_88 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_90 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_101 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_112 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_113 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_124 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_135 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_146 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_157 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_162 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_163 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_164 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_165 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_166 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_167 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_168 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_169 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_171 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_172 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_173 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_174 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_175 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_176 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_177 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_178 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_179 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_180 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_181 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_182 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_183 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_184 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_185 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_186 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_187 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_188 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_189 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_190 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_192 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_193 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_194 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_195 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_196 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_198 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_199 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_201 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_202 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_203 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_204 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_205 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_206 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_207 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_208 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_209 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_210 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_213 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_214 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_215 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_216 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_217 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_218 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_219 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_220 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_221 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_222 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_223 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_224 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_226 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_227 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_228 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_229 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_230 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_231 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_232 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_233 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_235 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_238 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_241 | 1.0 | 0.0 | 1.0 |
| CAIKOPNP_242 | 0.0 | 1.0 | 0.0 |
| CAIKOPNP_243 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)