Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ALPMCMPI_12 | 164683 | 168315 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 102.02 | NC_008618.1 |
| ALPMCMPI_45 | 43151 | 43522 | Mycobacterium tuberculosis rpsL mutations conferring resistance to Streptomycin | ARO:3003395 | Mtub_rpsL_STR | 82.93 | 99.19 | NC_000962.3 |
| ALPMCMPI_56 | 212 | 3538 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.73 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ALPMCMPI_1 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_2 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_3 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_4 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_5 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_6 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_7 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_8 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_9 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_10 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_11 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_12 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_13 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_14 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_15 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_16 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_17 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_18 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_19 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_20 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_21 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_22 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_23 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_24 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_25 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_26 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_27 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_28 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_29 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_30 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_31 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_32 | 1.0 | 0.0 | 1.0 |
| ALPMCMPI_34 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_35 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_36 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_37 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_38 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_39 | 1.0 | 0.0 | 1.0 |
| ALPMCMPI_40 | 1.0 | 0.0 | 1.0 |
| ALPMCMPI_41 | 1.0 | 0.0 | 1.0 |
| ALPMCMPI_42 | 1.0 | 0.0 | 1.0 |
| ALPMCMPI_43 | 1.0 | 0.0 | 1.0 |
| ALPMCMPI_44 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_45 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_46 | 1.0 | 0.0 | 1.0 |
| ALPMCMPI_47 | 1.0 | 0.0 | 1.0 |
| ALPMCMPI_48 | 1.0 | 0.0 | 1.0 |
| ALPMCMPI_49 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_50 | 1.0 | 0.0 | 1.0 |
| ALPMCMPI_56 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_57 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_58 | 0.0 | 1.0 | 0.0 |
| ALPMCMPI_59 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ALPMCMPI_4 | 1827 | 16448 | False | Siphoviridae | VOG2560, VOG5101, VOG0720, VOG4576, VOG4553, VOG0880, VOG1581, VOG5601, VOG5793 |
| ALPMCMPI_5 | 17313 | 24994 | False | Siphoviridae | VOG2090, VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
| ALPMCMPI_45 | 87499 | 109296 | False | Myoviridae | VOG5012, VOG2090, VOG8190, VOG0052, VOG0382, VOG5689, VOG11016, VOG4548, VOG0384 |
| ALPMCMPI_58 | 99158 | 100504 | False | Unknown | VOG0275 |
Phigaro v2.4.0 (Database: Jan. 2024 release)