Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KJKBLLFP_39 | 58503 | 62066 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
| KJKBLLFP_39 | 18375 | 19283 | aad(6) | ARO:3002628 | aad(6) | 92.75 | 109.42 | AY712687.1 |
| KJKBLLFP_39 | 17836 | 18378 | SAT-4 | ARO:3002897 | SAT-4 | 99.44 | 100.00 | U01945.1 |
| KJKBLLFP_39 | 16979 | 17743 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 96.21 | CP004067.1 |
| KJKBLLFP_39 | 11998 | 13917 | tet(W) | ARO:3000194 | tet(W) | 100.00 | 100.00 | AJ222769.3 |
| KJKBLLFP_12 | 9591 | 10871 | tet(O) | ARO:3000190 | tet(O) | 97.86 | 66.67 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KJKBLLFP_39 | 11998 | 13917 | tet(W) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | AJ427422 |
| KJKBLLFP_39 | 16949 | 17743 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 99.87 | 100.00 | M26832 |
| KJKBLLFP_12 | 9591 | 11514 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.27 | 100.00 | M18896 |
| KJKBLLFP_39 | 18375 | 19283 | ant(6)-Ia | Streptomycin | 92.76 | 99.78 | AF330699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KJKBLLFP_39 | 18378 | 19283 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_001255864.1 |
| KJKBLLFP_39 | 17839 | 18378 | sat4 | streptothricin N-acetyltransferase Sat4 | EXACTX | 100.00 | 100.00 | WP_000627290.1 |
| KJKBLLFP_39 | 11998 | 13914 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_002586627.1 |
| KJKBLLFP_39 | 16952 | 17743 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | INTERNAL_STOP | 99.62 | 100.00 | WP_001096887.1 |
| KJKBLLFP_12 | 9591 | 10853 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | PARTIALX | 98.81 | 65.88 | WP_063856405.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KJKBLLFP_1 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_2 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_3 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_4 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_5 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_6 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_7 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_8 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_9 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_10 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_11 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_12 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_13 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_14 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_15 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_16 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_17 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_18 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_19 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_20 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_21 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_22 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_23 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_24 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_25 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_26 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_27 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_28 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_29 | 1.0 | 0.0 | 1.0 |
| KJKBLLFP_30 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_31 | 1.0 | 0.0 | 1.0 |
| KJKBLLFP_32 | 1.0 | 0.0 | 1.0 |
| KJKBLLFP_34 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_37 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_38 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_39 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_40 | 0.0 | 1.0 | 0.0 |
| KJKBLLFP_41 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KJKBLLFP_8 | 49255 | 55427 | False | Unknown | VOG1298, VOG7138, VOG4567, VOG5091, VOG4552, VOG7246, VOG8486, VOG4600, VOG1309, VOG0226 |
| KJKBLLFP_20 | 4006 | 12531 | False | Siphoviridae | VOG2038, VOG0296, VOG4544, VOG4556, VOG4568, VOG4553, VOG0880, VOG1210 |
| KJKBLLFP_23 | 112638 | 140875 | False | Siphoviridae | VOG4583, VOG2038, VOG1154, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG5504, VOG1581, VOG3409, VOG1159, VOG2639, VOG4557, VOG4582, VOG5793, VOG4605, VOG4599, VOG0933, VOG0979, VOG3298, VOG7888, VOG9502, VOG0731, VOG0267 |
Phigaro v2.4.0 (Database: Jan. 2024 release)