Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BEEJPLNJ_1 | 164704 | 168336 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.30 | 102.02 | NC_008618.1 |
| BEEJPLNJ_45 | 64647 | 65018 | Mycobacterium tuberculosis rpsL mutations conferring resistance to Streptomycin | ARO:3003395 | Mtub_rpsL_STR | 82.93 | 99.19 | NC_000962.3 |
| BEEJPLNJ_8 | 51190 | 54516 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.73 | 100.09 | CP001840.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BEEJPLNJ_1 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_2 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_3 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_4 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_5 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_6 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_7 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_8 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_9 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_10 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_11 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_12 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_13 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_14 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_15 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_16 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_17 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_18 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_19 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_20 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_21 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_22 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_23 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_24 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_25 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_26 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_27 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_28 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_29 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_30 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_31 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_32 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_33 | 1.0 | 0.0 | 1.0 |
| BEEJPLNJ_34 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_35 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_36 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_37 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_38 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_39 | 1.0 | 0.0 | 1.0 |
| BEEJPLNJ_40 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_41 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_43 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_44 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_45 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_46 | 1.0 | 0.0 | 1.0 |
| BEEJPLNJ_47 | 1.0 | 0.0 | 1.0 |
| BEEJPLNJ_48 | 1.0 | 0.0 | 1.0 |
| BEEJPLNJ_49 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_50 | 1.0 | 0.0 | 1.0 |
| BEEJPLNJ_51 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_52 | 1.0 | 0.0 | 1.0 |
| BEEJPLNJ_53 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_55 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_56 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_57 | 0.0 | 1.0 | 0.0 |
| BEEJPLNJ_58 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BEEJPLNJ_14 | 5584 | 10255 | False | Siphoviridae | VOG2560, VOG9852, VOG4841, VOG2038, VOG2538, VOG0943 |
| BEEJPLNJ_19 | 2493 | 7085 | False | Unknown | VOG0010, VOG3304, VOG0585 |
Phigaro v2.4.0 (Database: Jan. 2024 release)