Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 0 | 0 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EGJJNKJM_2 | 98114 | 100033 | tet(W) | ARO:3000194 | tet(W) | 100.00 | 100.00 | AJ222769.3 |
| EGJJNKJM_2 | 94288 | 95052 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 96.21 | CP004067.1 |
| EGJJNKJM_2 | 93653 | 94195 | SAT-4 | ARO:3002897 | SAT-4 | 99.44 | 100.00 | U01945.1 |
| EGJJNKJM_2 | 92748 | 93656 | aad(6) | ARO:3002628 | aad(6) | 92.75 | 109.42 | AY712687.1 |
| EGJJNKJM_2 | 49965 | 53528 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
| EGJJNKJM_13 | 1883 | 3163 | tet(O) | ARO:3000190 | tet(O) | 97.86 | 66.67 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EGJJNKJM_2 | 98114 | 100033 | tet(W) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | AJ427422 |
| EGJJNKJM_2 | 94288 | 95082 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 99.87 | 100.00 | M26832 |
| EGJJNKJM_13 | 1240 | 3163 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.27 | 100.00 | M18896 |
| EGJJNKJM_2 | 92748 | 93656 | ant(6)-Ia | Streptomycin | 92.76 | 99.78 | AF330699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EGJJNKJM_2 | 92748 | 93653 | ant(6)-Ia | aminoglycoside nucleotidyltransferase ANT(6)-Ia | EXACTX | 100.00 | 100.00 | WP_001255864.1 |
| EGJJNKJM_2 | 93653 | 94192 | sat4 | streptothricin N-acetyltransferase Sat4 | EXACTX | 100.00 | 100.00 | WP_000627290.1 |
| EGJJNKJM_2 | 98117 | 100033 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_002586627.1 |
| EGJJNKJM_2 | 94288 | 95079 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | INTERNAL_STOP | 99.62 | 100.00 | WP_001096887.1 |
| EGJJNKJM_13 | 1901 | 3163 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | PARTIALX | 98.81 | 65.88 | WP_063856405.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EGJJNKJM_1 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_2 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_3 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_4 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_5 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_6 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_7 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_8 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_9 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_10 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_11 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_12 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_13 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_15 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_16 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_17 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_18 | 1.0 | 0.0 | 1.0 |
| EGJJNKJM_19 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_20 | 1.0 | 0.0 | 1.0 |
| EGJJNKJM_23 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_34 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_37 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_38 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_39 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_40 | 0.0 | 1.0 | 0.0 |
| EGJJNKJM_41 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EGJJNKJM_23 | 49279 | 56084 | False | Unknown | VOG1298, VOG7138, VOG4567, VOG5091, VOG4552, VOG7246, VOG8486, VOG4600, VOG1309, VOG0226, VOG4693 |
| EGJJNKJM_23 | 59501 | 68803 | False | Siphoviridae | VOG2038, VOG0296, VOG4544, VOG4556, VOG4568, VOG4553, VOG0880, VOG1210, VOG1159 |
| EGJJNKJM_40 | 82438 | 110675 | False | Siphoviridae | VOG4583, VOG2038, VOG1154, VOG4544, VOG0720, VOG4576, VOG4555, VOG4553, VOG5504, VOG1581, VOG3409, VOG1159, VOG2639, VOG4557, VOG4582, VOG5793, VOG4605, VOG4599, VOG0933, VOG0979, VOG3298, VOG7888, VOG9502, VOG0731, VOG0267 |
Phigaro v2.4.0 (Database: Jan. 2024 release)