Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 10 | 3 | 10.63 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PLKMJMHE_1 | 654262 | 655192 | mph(K) | Spiramycin, Telithromycin | 96.24 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PLKMJMHE_1 | 367857 | 369212 | vmlR | ABC-F type ribosomal protection protein VmlR | INTERNAL_STOP | 91.25 | 83.55 | WP_003234144.1 |
| PLKMJMHE_1 | 985552 | 985884 | satA | streptothricin N-acetyltransferase SatA | PARTIALX | 83.78 | 64.16 | WP_003242546.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PLKMJMHE_1 | 2893608 | 2894249 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 98.91 | 100.00 | NP_390062 |
| PLKMJMHE_1 | 1456910 | 1458053 | capA | 0.0 | Capsule | Immune modulation | 98.60 | 100.00 | NP_391469 |
| PLKMJMHE_1 | 1455240 | 1456425 | capB | 0.0 | Capsule | Immune modulation | 98.31 | 100.08 | NP_391471 |
| PLKMJMHE_1 | 1456440 | 1456891 | capC | 0.0 | Capsule | Immune modulation | 98.01 | 100.22 | NP_391470 |
| PLKMJMHE_1 | 1868328 | 1869268 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.98 | 100.00 | NP_391077 |
| PLKMJMHE_1 | 1864637 | 1865426 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.85 | 100.13 | NP_391080 |
| PLKMJMHE_1 | 3044662 | 3046430 | dep/capD | 0.0 | Capsule | Immune modulation | 97.74 | 100.11 | NP_389723 |
| PLKMJMHE_1 | 1865452 | 1866652 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.42 | 100.17 | NP_391079 |
| PLKMJMHE_1 | 1869288 | 1876443 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.28 | 99.96 | NP_391076 |
| PLKMJMHE_1 | 1866670 | 1868300 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 96.51 | 100.06 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PLKMJMHE_1 | 932360 | 931731 | pdxS | 1.77e-125 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 86.67 | 71.19 | ACE61268 |
| PLKMJMHE_1 | 3246628 | 3245867 | CodY | 1.66e-119 | nutrient-responsive regulator | 80.71 | 98.07 | ACJ80679 |
| PLKMJMHE_1 | 3246604 | 3245867 | codY | 1.90e-114 | global regulator and isoleucine sensor | 80.08 | 94.98 | ASW39076 |
| PLKMJMHE_1 | 3707500 | 3707111 | spxA1 | 4.42e-67 | redox-responsive transcription factor | 83.21 | 99.24 | AAF21893 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PLKMJMHE_3 | 4315 | 4502 | Col(SD853) | 188 / 194 | 85.11 | NC015392 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PLKMJMHE_1 | 0.0 | 1.0 | 0.0 |
| PLKMJMHE_2 | 1.0 | 0.0 | 1.0 |
| PLKMJMHE_3 | 1.0 | 0.0 | 1.0 |
| PLKMJMHE_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PLKMJMHE_1 | 1985209 | 1992792 | False | Siphoviridae | VOG0720, VOG4564, VOG4555, VOG1329, VOG1329, VOG3480, VOG4623, VOG4589, VOG0724, VOG0799, VOG2621, VOG2621, VOG0725 |
| PLKMJMHE_1 | 2495062 | 2498655 | False | Myoviridae | VOG4870, VOG3890, VOG3890, VOG3891 |
| PLKMJMHE_1 | 3598749 | 3610307 | False | Myoviridae | VOG3892, VOG3891, VOG3891, VOG3890, VOG3890, VOG3890, VOG3890, VOG10055, VOG0749, VOG0749, VOG4685, VOG4773, VOG4773, VOG4773, VOG10227, VOG9315, VOG0796, VOG0796, VOG0796 |
Phigaro v2.4.0 (Database: Jan. 2024 release)