Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 10 | 4 | 10.95 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GCOMOKKJ_1 | 3318259 | 3319186 | mph(K) | Spiramycin, Telithromycin | 96.98 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GCOMOKKJ_1 | 2982670 | 2983041 | satA | streptothricin N-acetyltransferase SatA | PARTIALX | 90.32 | 71.68 | WP_003242546.1 |
| GCOMOKKJ_1 | 3318259 | 3319044 | mphK | macrolide 2'-phosphotransferase MphK | INTERNAL_STOP | 83.02 | 84.97 | WP_003246254.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GCOMOKKJ_1 | 1074887 | 1075528 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.38 | 100.00 | NP_390062 |
| GCOMOKKJ_1 | 2510593 | 2511042 | capC | 0.0 | Capsule | Immune modulation | 99.11 | 100.00 | NP_391470 |
| GCOMOKKJ_1 | 2511057 | 2512241 | capB | 0.0 | Capsule | Immune modulation | 98.90 | 100.08 | NP_391471 |
| GCOMOKKJ_1 | 2098462 | 2099402 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.83 | 100.11 | NP_391077 |
| GCOMOKKJ_1 | 2509431 | 2510574 | capA | 0.0 | Capsule | Immune modulation | 98.60 | 100.00 | NP_391469 |
| GCOMOKKJ_1 | 922676 | 924443 | dep/capD | 0.0 | Capsule | Immune modulation | 98.30 | 100.06 | NP_389723 |
| GCOMOKKJ_1 | 2099430 | 2101057 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.28 | 100.25 | NP_391078 |
| GCOMOKKJ_1 | 2102302 | 2103090 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.23 | 99.87 | NP_391080 |
| GCOMOKKJ_1 | 2101075 | 2102276 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.17 | 100.08 | NP_391079 |
| GCOMOKKJ_1 | 2091286 | 2098442 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.17 | 100.04 | NP_391076 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GCOMOKKJ_1 | 3036142 | 3037011 | pdxS | 2.95e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| GCOMOKKJ_1 | 722634 | 723410 | CodY | 3.22e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| GCOMOKKJ_1 | 2365215 | 2365697 | ClpP | 6.89e-84 | part of proteolytic complex | 83.85 | 82.56 | BAB94595 |
| GCOMOKKJ_1 | 263462 | 263854 | spxA1 | 2.53e-69 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| GCOMOKKJ_1 | 263462 | 263854 | spx | 1.51e-67 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GCOMOKKJ_3 | 1321 | 1507 | Col(SD853) | 187 / 194 | 85.56 | NC015392 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GCOMOKKJ_1 | 0.0 | 1.0 | 0.0 |
| GCOMOKKJ_2 | 1.0 | 0.0 | 1.0 |
| GCOMOKKJ_3 | 1.0 | 0.0 | 1.0 |
| GCOMOKKJ_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GCOMOKKJ_1 | 360158 | 369820 | False | Myoviridae | VOG5447, VOG0796, VOG0796, VOG10227, VOG4773, VOG4773, VOG4685, VOG0749, VOG0749, VOG10055, VOG3890, VOG3890, VOG3890 |
| GCOMOKKJ_1 | 1461708 | 1474901 | False | Myoviridae | VOG4691, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3892, VOG3891, VOG3890, VOG3890, VOG10055, VOG4870, VOG4589 |
| GCOMOKKJ_1 | 1966634 | 1983599 | False | Siphoviridae | VOG1125, VOG4599, VOG4599, VOG0727, VOG4605, VOG9745, VOG1323, VOG0725, VOG2621, VOG0799, VOG0724, VOG0816, VOG4623, VOG3480, VOG1329, VOG4555, VOG4564, VOG0720, VOG0720 |
Phigaro v2.4.0 (Database: Jan. 2024 release)