Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 10 | 3 | 11.18 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MNJFOOMN_1 | 1355887 | 1356204 | ykkD | ARO:3003064 | ykkD | 97.14 | 100.00 | AL009126.1 |
| MNJFOOMN_1 | 1355549 | 1355887 | ykkC | ARO:3003063 | ykkC | 98.21 | 100.00 | AL009126.1 |
| MNJFOOMN_1 | 540618 | 542243 | vmlR | ARO:3004476 | vmlR | 95.56 | 98.90 | NC_000964.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MNJFOOMN_1 | 245492 | 246414 | mph(K) | Spiramycin, Telithromycin | 97.18 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MNJFOOMN_1 | 540621 | 542243 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 95.56 | 98.90 | WP_003234144.1 |
| MNJFOOMN_1 | 245806 | 246411 | mphK | macrolide 2'-phosphotransferase MphK | PARTIALX | 96.04 | 66.01 | WP_003246254.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MNJFOOMN_1 | 3499628 | 3500809 | capB | 0.0 | Capsule | Immune modulation | 99.49 | 100.00 | NP_391471 |
| MNJFOOMN_1 | 2052643 | 2053285 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.07 | 100.00 | NP_390062 |
| MNJFOOMN_1 | 3088952 | 3089889 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.04 | 99.79 | NP_391077 |
| MNJFOOMN_1 | 3091569 | 3092766 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.92 | 100.00 | NP_391079 |
| MNJFOOMN_1 | 1887615 | 1889380 | dep/capD | 0.0 | Capsule | Immune modulation | 98.75 | 100.00 | NP_389723 |
| MNJFOOMN_1 | 3092792 | 3093578 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.60 | 100.00 | NP_391080 |
| MNJFOOMN_1 | 3089917 | 3091540 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.58 | 100.12 | NP_391078 |
| MNJFOOMN_1 | 3499164 | 3499613 | capC | 0.0 | Capsule | Immune modulation | 98.44 | 100.00 | NP_391470 |
| MNJFOOMN_1 | 3081793 | 3088933 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.47 | 99.93 | NP_391076 |
| MNJFOOMN_1 | 3498021 | 3499145 | capA | 0.0 | Capsule | Immune modulation | 96.76 | 99.83 | NP_391469 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MNJFOOMN_1 | 104706 | 105551 | tufA | 9.81e-167 | elongation factor Tu | 85.82 | 71.32 | AHM69299 |
| MNJFOOMN_1 | 4032902 | 4033771 | pdxS | 2.39e-155 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 82.76 | 98.31 | ACE61268 |
| MNJFOOMN_1 | 1682458 | 1683234 | CodY | 6.56e-122 | nutrient-responsive regulator | 80.31 | 100.00 | ACJ80679 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| MNJFOOMN_3 | 1442 | 1629 | Col(SD853) | 188 / 194 | 82.98 | NC015392 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MNJFOOMN_1 | 0.0 | 1.0 | 0.0 |
| MNJFOOMN_2 | 1.0 | 0.0 | 1.0 |
| MNJFOOMN_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MNJFOOMN_1 | 590525 | 599420 | False | Siphoviridae | VOG4602, VOG4662, VOG9667, VOG9667, VOG0650, VOG4552, VOG4600, VOG1309, VOG4566, VOG0189, VOG0044 |
| MNJFOOMN_1 | 606388 | 623213 | False | Siphoviridae | VOG0796, VOG10227, VOG0691, VOG0691, VOG0692, VOG9317, VOG9317, VOG4572, VOG2621, VOG0695, VOG0696, VOG6548, VOG10044, VOG0701, VOG0701, VOG6163, VOG9745, VOG9745, VOG4605, VOG4599, VOG4763, VOG10944 |
| MNJFOOMN_1 | 1303159 | 1324311 | False | Myoviridae | VOG5447, VOG0796, VOG0796, VOG9315, VOG10227, VOG4773, VOG4685, VOG0749, VOG3890, VOG3890, VOG3890, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG7718 |
| MNJFOOMN_1 | 2296136 | 2322149 | False | Siphoviridae | VOG11003, VOG7531, VOG7531, VOG0705, VOG0705, VOG6116, VOG7508, VOG0602, VOG4574, VOG5221, VOG4705, VOG6243, VOG4612, VOG4626, VOG4619, VOG0801, VOG6163, VOG4545, VOG4545, VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG5601, VOG4553, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841 |
| MNJFOOMN_1 | 2343391 | 2348983 | False | Unknown | VOG0982, VOG0026, VOG6497, VOG5385, VOG10937 |
| MNJFOOMN_1 | 2558784 | 2583008 | False | Siphoviridae | VOG4666, VOG4707, VOG0641, VOG4705, VOG6243, VOG4612, VOG4626, VOG4772, VOG0801, VOG0348, VOG5910, VOG4586, VOG0704, VOG9583, VOG1266, VOG4589, VOG0204, VOG5361, VOG4553, VOG4568, VOG4556, VOG3607, VOG1886, VOG4581, VOG0713, VOG4841, VOG0275, VOG0198, VOG6242, VOG1312, VOG0044 |
Phigaro v2.4.0 (Database: Jan. 2024 release)