Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 6 | 10 | 3 | 12.04 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BDDMGOKO_1 | 3536469 | 3536807 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| BDDMGOKO_1 | 3536152 | 3536469 | ykkD | ARO:3003064 | ykkD | 97.14 | 100.00 | AL009126.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BDDMGOKO_1 | 605932 | 606853 | mph(K) | Spiramycin, Telithromycin | 98.26 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BDDMGOKO_1 | 983677 | 984048 | satA | streptothricin N-acetyltransferase SatA | PARTIALX | 91.13 | 71.68 | WP_003242546.1 |
| BDDMGOKO_1 | 336808 | 338028 | vmlR | ABC-F type ribosomal protection protein VmlR | INTERNAL_STOP | 81.88 | 74.41 | WP_003234144.1 |
| BDDMGOKO_1 | 3004975 | 3007569 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.18 | 100.00 | WP_087347987.1 |
| BDDMGOKO_1 | 606263 | 606853 | mphK | macrolide 2'-phosphotransferase MphK | PARTIALX | 98.48 | 64.38 | WP_003246254.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| BDDMGOKO_1 | 2855193 | 2855835 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 100.00 | NP_390062 |
| BDDMGOKO_1 | 1906367 | 1907152 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| BDDMGOKO_1 | 1910039 | 1910979 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391077 |
| BDDMGOKO_1 | 1452913 | 1454091 | capB | 0.0 | Capsule | Immune modulation | 99.32 | 99.83 | NP_391471 |
| BDDMGOKO_1 | 1454576 | 1455718 | capA | 0.0 | Capsule | Immune modulation | 99.21 | 100.00 | NP_391469 |
| BDDMGOKO_1 | 1907178 | 1908375 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.75 | 100.00 | NP_391079 |
| BDDMGOKO_1 | 2952568 | 2954331 | dep/capD | 0.0 | Capsule | Immune modulation | 98.75 | 99.94 | NP_389723 |
| BDDMGOKO_1 | 1454106 | 1454557 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.22 | NP_391470 |
| BDDMGOKO_1 | 1910999 | 1918134 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.67 | 99.96 | NP_391076 |
| BDDMGOKO_1 | 1908393 | 1910011 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.58 | 99.94 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BDDMGOKO_1 | 932155 | 931286 | pdxS | 3.46e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| BDDMGOKO_1 | 3224170 | 3223394 | CodY | 3.21e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| BDDMGOKO_1 | 1611838 | 1611269 | ClpP | 2.38e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BDDMGOKO_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BDDMGOKO_1 | 739804 | 764335 | False | Myoviridae | VOG4862, VOG4862, VOG4691, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG3890, VOG10055, VOG4870, VOG4589, VOG1581, VOG0749, VOG4685, VOG4685, VOG6965, VOG4688, VOG4773, VOG9315, VOG3699, VOG2185 |
| BDDMGOKO_1 | 775952 | 781525 | False | Unknown | VOG1292, VOG1309, VOG0083, VOG1878, VOG3549 |
| BDDMGOKO_1 | 1809953 | 1841182 | False | Siphoviridae | VOG4602, VOG9667, VOG0181, VOG4556, VOG0787, VOG1638, VOG4552, VOG4566, VOG9600, VOG0025, VOG1884, VOG0198, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG0083, VOG4553, VOG5361, VOG0204, VOG0704, VOG4586, VOG0541, VOG5910, VOG4611, VOG6163, VOG6163, VOG2232, VOG0801, VOG4619, VOG4660, VOG4660, VOG4660, VOG4612, VOG4612, VOG3390, VOG4705 |
| BDDMGOKO_1 | 3570529 | 3583988 | False | Myoviridae | VOG3891, VOG3890, VOG3890, VOG3890, VOG3890, VOG0749, VOG4685, VOG4773, VOG10227, VOG0796, VOG5447, VOG4861, VOG0189, VOG3490, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)