Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 10 | 4 | 10.82 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JIDPPCJL_1 | 658282 | 659206 | mph(K) | Spiramycin, Telithromycin | 97.30 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JIDPPCJL_1 | 2869753 | 2870394 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.38 | 100.00 | NP_390062 |
| JIDPPCJL_1 | 1464241 | 1464690 | capC | 0.0 | Capsule | Immune modulation | 99.11 | 100.00 | NP_391470 |
| JIDPPCJL_1 | 1464709 | 1465852 | capA | 0.0 | Capsule | Immune modulation | 98.95 | 100.00 | NP_391469 |
| JIDPPCJL_1 | 1877276 | 1878215 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.83 | 100.00 | NP_391077 |
| JIDPPCJL_1 | 3020842 | 3022607 | dep/capD | 0.0 | Capsule | Immune modulation | 98.58 | 99.94 | NP_389723 |
| JIDPPCJL_1 | 1463040 | 1464226 | capB | 0.0 | Capsule | Immune modulation | 98.57 | 100.17 | NP_391471 |
| JIDPPCJL_1 | 1874405 | 1875609 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.34 | 100.33 | NP_391079 |
| JIDPPCJL_1 | 1878235 | 1885389 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.32 | 100.04 | NP_391076 |
| JIDPPCJL_1 | 1875627 | 1877248 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.27 | 100.06 | NP_391078 |
| JIDPPCJL_1 | 1873588 | 1874379 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.98 | 100.25 | NP_391080 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JIDPPCJL_1 | 939850 | 938981 | pdxS | 2.93e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| JIDPPCJL_1 | 3222643 | 3221867 | CodY | 3.46e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JIDPPCJL_1 | 1611686 | 1611204 | ClpP | 6.85e-84 | part of proteolytic complex | 83.85 | 82.56 | BAB94595 |
| JIDPPCJL_1 | 3683504 | 3683112 | spxA1 | 2.51e-69 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| JIDPPCJL_1 | 3683504 | 3683112 | spx | 1.50e-67 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JIDPPCJL_2 | 5794 | 5954 | Col(SD853) | 161 / 194 | 83.85 | NC015392 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JIDPPCJL_1 | 0.0 | 1.0 | 0.0 |
| JIDPPCJL_2 | 1.0 | 0.0 | 1.0 |
| JIDPPCJL_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JIDPPCJL_1 | 1992463 | 2011267 | False | Siphoviridae | VOG0720, VOG4564, VOG4555, VOG1329, VOG3480, VOG4623, VOG0816, VOG5660, VOG0724, VOG0799, VOG2621, VOG0725, VOG1323, VOG4183, VOG4545, VOG4605, VOG4599, VOG4599, VOG3390, VOG5535 |
| JIDPPCJL_1 | 3579752 | 3587282 | False | Unknown | VOG4685, VOG4773, VOG4773, VOG10227, VOG9315, VOG0796, VOG0796, VOG5447, VOG0189 |
Phigaro v2.4.0 (Database: Jan. 2024 release)