Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 7 | 3 | 8.60 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGJIHJDJ_1 | 3345735 | 3346073 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| KGJIHJDJ_1 | 3345418 | 3345735 | ykkD | ARO:3003064 | ykkD | 97.14 | 100.00 | AL009126.1 |
| KGJIHJDJ_1 | 272873 | 273466 | tmrB | ARO:3003059 | tmrB | 95.94 | 100.00 | AL009126.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KGJIHJDJ_1 | 334763 | 335686 | mph(K) | Spiramycin, Telithromycin | 97.29 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGJIHJDJ_1 | 334766 | 335686 | mphK | macrolide 2'-phosphotransferase MphK | INTERNAL_STOP | 82.20 | 100.00 | WP_003246254.1 |
| KGJIHJDJ_1 | 34331 | 35410 | vmlR | ABC-F type ribosomal protection protein VmlR | INTERNAL_STOP | 91.67 | 65.81 | WP_003234144.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KGJIHJDJ_1 | 2577096 | 2577738 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.07 | 100.00 | NP_390062 |
| KGJIHJDJ_1 | 1637847 | 1638784 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.40 | 99.89 | NP_391077 |
| KGJIHJDJ_1 | 2785594 | 2787358 | dep/capD | 0.0 | Capsule | Immune modulation | 98.36 | 99.94 | NP_389723 |
| KGJIHJDJ_1 | 1634172 | 1634957 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.35 | 100.00 | NP_391080 |
| KGJIHJDJ_1 | 1634983 | 1636180 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.08 | 100.00 | NP_391079 |
| KGJIHJDJ_1 | 1638804 | 1645953 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.26 | 100.01 | NP_391076 |
| KGJIHJDJ_1 | 1636198 | 1637819 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 96.92 | 100.06 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KGJIHJDJ_1 | 518638 | 517502 | tufA | 0.0 | elongation factor Tu | 83.91 | 95.69 | AHM69299 |
| KGJIHJDJ_1 | 632606 | 631737 | pdxS | 1.66e-155 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.10 | 98.31 | ACE61268 |
| KGJIHJDJ_1 | 2999514 | 2998738 | CodY | 4.04e-122 | nutrient-responsive regulator | 80.31 | 100.00 | ACJ80679 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KGJIHJDJ_4 | 4010 | 4203 | Col(SD853) | 194 / 194 | 87.63 | NC015392 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KGJIHJDJ_1 | 0.0 | 1.0 | 0.0 |
| KGJIHJDJ_2 | 1.0 | 0.0 | 1.0 |
| KGJIHJDJ_3 | 1.0 | 0.0 | 1.0 |
| KGJIHJDJ_4 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KGJIHJDJ_1 | 1524282 | 1557156 | False | Siphoviridae | VOG4566, VOG0189, VOG6931, VOG6587, VOG8460, VOG1336, VOG0397, VOG0044, VOG6581, VOG0198, VOG0275, VOG4841, VOG0713, VOG4581, VOG1886, VOG3607, VOG4556, VOG4568, VOG4553, VOG5361, VOG0204, VOG9583, VOG0704, VOG4586, VOG5910, VOG0348, VOG0801, VOG4772, VOG4626, VOG4626, VOG3390, VOG4705, VOG4612, VOG4612, VOG3390, VOG7896, VOG0641, VOG4707, VOG0992 |
| KGJIHJDJ_1 | 3376623 | 3401964 | False | Myoviridae | VOG4705, VOG7718, VOG7718, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885, VOG4865, VOG6163, VOG3892, VOG3891, VOG3890, VOG3890, VOG3890, VOG3890, VOG0749, VOG4685, VOG4773, VOG4773, VOG10227, VOG9315, VOG0796, VOG3699, VOG5447, VOG5447, VOG4843, VOG0189, VOG3490, VOG9667, VOG4602 |
| KGJIHJDJ_1 | 4066666 | 4087973 | False | Siphoviridae | VOG0753, VOG5535, VOG3390, VOG4599, VOG4605, VOG9745, VOG1323, VOG0725, VOG2621, VOG0799, VOG0724, VOG5660, VOG0816, VOG4589, VOG4623, VOG3480, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG6005, VOG6251 |
| KGJIHJDJ_1 | 4091639 | 4099807 | False | Myoviridae | VOG0536, VOG0536, VOG0044, VOG0189, VOG5263, VOG1309, VOG1309, VOG4600, VOG4552, VOG0650, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)