Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 10 | 5 | 11.18 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JJNANEPM_1 | 2820709 | 2821352 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.22 | 100.16 | NP_390062 |
| JJNANEPM_1 | 1218129 | 1218578 | capC | 0.0 | Capsule | Immune modulation | 99.11 | 100.00 | NP_391470 |
| JJNANEPM_1 | 1216931 | 1218114 | capB | 0.0 | Capsule | Immune modulation | 98.82 | 100.00 | NP_391471 |
| JJNANEPM_1 | 1733977 | 1734767 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.61 | 100.25 | NP_391080 |
| JJNANEPM_1 | 1737668 | 1738607 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.30 | 100.00 | NP_391077 |
| JJNANEPM_1 | 2991038 | 2992805 | dep/capD | 0.0 | Capsule | Immune modulation | 98.19 | 100.11 | NP_389723 |
| JJNANEPM_1 | 1734793 | 1735995 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.09 | 100.08 | NP_391079 |
| JJNANEPM_1 | 1218597 | 1219744 | capA | 0.0 | Capsule | Immune modulation | 98.08 | 100.09 | NP_391469 |
| JJNANEPM_1 | 1738627 | 1745781 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.93 | 100.06 | NP_391076 |
| JJNANEPM_1 | 1736013 | 1737640 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.54 | 100.19 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JJNANEPM_1 | 639845 | 638976 | pdxS | 3.32e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| JJNANEPM_1 | 3342569 | 3341793 | CodY | 3.10e-123 | nutrient-responsive regulator | 80.69 | 100.00 | ACJ80679 |
| JJNANEPM_1 | 1375480 | 1374998 | ClpP | 7.76e-84 | part of proteolytic complex | 83.85 | 82.56 | BAB94595 |
| JJNANEPM_1 | 3828375 | 3827983 | spxA1 | 2.85e-69 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| JJNANEPM_1 | 3828375 | 3827983 | spx | 1.70e-67 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| JJNANEPM_1 | 1690751 | 1691446 | lipA (SAUSA300_0829) | 1.40e-134 | lipoic acid synthetase | 81.03 | 76.07 | ABD22039 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JJNANEPM_2 | 2812 | 2979 | Col(SD853) | 168 / 194 | 86.90 | NC015392 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JJNANEPM_1 | 0.0 | 1.0 | 0.0 |
| JJNANEPM_2 | 1.0 | 0.0 | 1.0 |
| JJNANEPM_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JJNANEPM_1 | 1472108 | 1476506 | True | Unknown | VOG9667, VOG6495, VOG0944, VOG8387, VOG4566 |
| JJNANEPM_1 | 1484518 | 1504461 | False | Siphoviridae | VOG4841, VOG0713, VOG4581, VOG3607, VOG4556, VOG4556, VOG4568, VOG4553, VOG4553, VOG4553, VOG5361, VOG0204, VOG4589, VOG0704, VOG4586, VOG0541, VOG5910, VOG0083, VOG0801, VOG4772, VOG4619, VOG4619, VOG4626, VOG4626, VOG4626, VOG4612, VOG6243, VOG4705 |
| JJNANEPM_1 | 1610504 | 1617470 | False | Siphoviridae | VOG4602, VOG9667, VOG0181, VOG4556, VOG0787, VOG1638, VOG4552, VOG4566, VOG9600, VOG0025 |
| JJNANEPM_1 | 1626083 | 1644868 | False | Siphoviridae | VOG4556, VOG4568, VOG4553, VOG0204, VOG4589, VOG0539, VOG4586, VOG0541, VOG5910, VOG6163, VOG2776, VOG6163, VOG0801, VOG4619, VOG4660, VOG4660, VOG4660, VOG4612, VOG3390, VOG4705, VOG5221, VOG0136, VOG4707 |
| JJNANEPM_1 | 2166631 | 2188550 | False | Siphoviridae | VOG0531, VOG4841, VOG4581, VOG1886, VOG1886, VOG4556, VOG4556, VOG4568, VOG4568, VOG4553, VOG5361, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG5910, VOG10611, VOG6163, VOG0801, VOG4619, VOG3462, VOG4660, VOG4660, VOG4660, VOG4660, VOG4612 |
| JJNANEPM_1 | 2339262 | 2363169 | False | Myoviridae | VOG4673, VOG0796, VOG9315, VOG10227, VOG4773, VOG4773, VOG4688, VOG4685, VOG0749, VOG0749, VOG4589, VOG4870, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG4885, VOG3894, VOG4691, VOG4862 |
| JJNANEPM_1 | 2774388 | 2790211 | False | Siphoviridae | VOG0221, VOG5023, VOG7734, VOG0720, VOG4555, VOG4553, VOG4713, VOG6163, VOG4779, VOG4910 |
| JJNANEPM_1 | 3132062 | 3145436 | False | Siphoviridae | VOG4724, VOG1198, VOG1198, VOG1198, VOG0918, VOG0918, VOG4551, VOG0025, VOG7476, VOG0322, VOG0322, VOG0944, VOG5532, VOG6211 |
| JJNANEPM_1 | 3215705 | 3223055 | False | Unknown | VOG5042, VOG5042, VOG9712, VOG4660, VOG4660, VOG4660 |
| JJNANEPM_1 | 3694057 | 3702441 | False | Myoviridae | VOG4705, VOG7718, VOG4862, VOG4691, VOG4691, VOG4550, VOG3894, VOG4885, VOG4885, VOG4865, VOG6163 |
| JJNANEPM_1 | 4429085 | 4446256 | False | Siphoviridae | VOG4605, VOG9745, VOG4545, VOG1323, VOG0725, VOG2621, VOG2621, VOG0799, VOG0724, VOG0816, VOG1329, VOG4555, VOG4564, VOG0720, VOG0720, VOG0720, VOG10227, VOG10227, VOG0796, VOG0198 |
| JJNANEPM_1 | 4450306 | 4460812 | False | Siphoviridae | VOG0044, VOG0189, VOG1309, VOG1309, VOG4600, VOG4600, VOG4600, VOG4552, VOG10917, VOG0650, VOG9667, VOG9667, VOG8483, VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)