Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LFDEFCAG_34 | 53695 | 52991 | WalR | 8.55e-115 | transcriptional regulatory protein | 83.83 | 100.00 | EPH95667 |
| LFDEFCAG_76 | 88606 | 88412 | CspR | 1.74e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| LFDEFCAG_76 | 88606 | 88409 | CspA | 2.68e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFDEFCAG_1 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_2 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_3 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_4 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_5 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_6 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_7 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_8 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_9 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_10 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_11 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_12 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_13 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_14 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_15 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_16 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_17 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_18 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_19 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_20 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_21 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_22 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_23 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_24 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_25 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_26 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_27 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_28 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_29 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_30 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_32 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_33 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_34 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_35 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_36 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_37 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_38 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_39 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_40 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_41 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_42 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_43 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_44 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_45 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_47 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_48 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_49 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_50 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_51 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_52 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_53 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_54 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_55 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_57 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_58 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_59 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_60 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_61 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_62 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_63 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_64 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_65 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_66 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_67 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_68 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_71 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_73 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_74 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_76 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_78 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_82 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_83 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_84 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_85 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_86 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_87 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_88 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_89 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_90 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_91 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_92 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_93 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_94 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_95 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_96 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_97 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_98 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_99 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_100 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_101 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_102 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_103 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_104 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_105 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_106 | 0.0 | 1.0 | 0.0 |
| LFDEFCAG_107 | 1.0 | 0.0 | 1.0 |
| LFDEFCAG_108 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LFDEFCAG_40 | 9620 | 28357 | False | Siphoviridae | VOG4632, VOG4609, VOG6414, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4553, VOG0204, VOG0198, VOG6422, VOG0275, VOG8491, VOG10613, VOG4602 |
| LFDEFCAG_40 | 35302 | 63513 | False | Siphoviridae | VOG0198, VOG0045, VOG0796, VOG4544, VOG0720, VOG7038, VOG4564, VOG10914, VOG3434, VOG1887, VOG4713, VOG1330, VOG0704, VOG4634, VOG1333, VOG1334, VOG4545, VOG1335, VOG10608, VOG3498, VOG8294, VOG1637 |
| LFDEFCAG_108 | 5280 | 31660 | False | Siphoviridae | VOG9998, VOG8870, VOG10957, VOG4599, VOG4605, VOG5904, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG10904, VOG4841, VOG1315, VOG0198, VOG1049, VOG3643, VOG0586, VOG7831 |
Phigaro v2.4.0 (Database: Jan. 2024 release)