Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NPLKKPDL_51 | 10801 | 10604 | CspR | 1.44e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| NPLKKPDL_51 | 10801 | 10604 | CspA | 2.68e-29 | cold shock protein | 80.30 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NPLKKPDL_1 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_2 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_4 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_5 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_6 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_8 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_13 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_17 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_18 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_19 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_20 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_21 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_22 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_23 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_24 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_25 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_27 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_28 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_29 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_30 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_31 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_32 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_33 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_34 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_35 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_36 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_37 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_38 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_39 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_40 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_41 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_42 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_43 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_44 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_45 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_46 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_47 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_48 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_49 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_50 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_51 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_52 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_53 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_54 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_55 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_56 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_57 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_58 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_59 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_60 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_61 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_62 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_63 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_64 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_65 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_66 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_67 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_68 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_69 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_70 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_72 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_73 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_74 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_75 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_76 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_78 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_79 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_80 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_81 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_82 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_83 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_84 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_85 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_87 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_88 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_89 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_90 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_91 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_92 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_96 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_97 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_98 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_99 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_102 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_103 | 1.0 | 0.0 | 1.0 |
| NPLKKPDL_105 | 0.0 | 1.0 | 0.0 |
| NPLKKPDL_107 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NPLKKPDL_25 | 24860 | 46773 | False | Myoviridae / Siphoviridae | VOG0189, VOG5235, VOG0083, VOG0382, VOG0384, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295, VOG1176, VOG10457 |
Phigaro v2.4.0 (Database: Jan. 2024 release)