Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KBACNJLD_1 | 38654 | 39358 | WalR | 1.80e-113 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KBACNJLD_2 | 8950 | 9879 | rep28 | 930 / 930 | 98.49 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KBACNJLD_1 | 0.0 | 1.0 | 0.0 |
| KBACNJLD_2 | 1.0 | 0.0 | 1.0 |
| KBACNJLD_3 | 1.0 | 0.0 | 1.0 |
| KBACNJLD_4 | 1.0 | 0.0 | 1.0 |
| KBACNJLD_5 | 1.0 | 0.0 | 1.0 |
| KBACNJLD_6 | 1.0 | 0.0 | 1.0 |
| KBACNJLD_7 | 1.0 | 0.0 | 1.0 |
| KBACNJLD_8 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KBACNJLD_1 | 1161446 | 1189472 | False | Siphoviridae | VOG0044, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4605, VOG4599, VOG10957, VOG8870, VOG0254, VOG10016, VOG4615 |
| KBACNJLD_1 | 1203484 | 1231247 | False | Siphoviridae | VOG0044, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4545, VOG4605, VOG4605, VOG4599, VOG10957, VOG8870, VOG0254, VOG10016 |
| KBACNJLD_1 | 1866829 | 1892661 | False | Siphoviridae | VOG8870, VOG10957, VOG10957, VOG4599, VOG0205, VOG0204, VOG4553, VOG0685, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG5532, VOG3624, VOG0198, VOG0044, VOG4693, VOG11024, VOG0189, VOG4566, VOG0514, VOG0514, VOG0226, VOG0283, VOG0685, VOG0650, VOG3711, VOG4552 |
| KBACNJLD_1 | 2187299 | 2216774 | False | Siphoviridae | VOG0054, VOG0753, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG9667, VOG0198 |
| KBACNJLD_1 | 2226673 | 2262958 | False | Siphoviridae | VOG1347, VOG0275, VOG9667, VOG0054, VOG0753, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG9667, VOG0198 |
| KBACNJLD_1 | 2278124 | 2287926 | False | Siphoviridae | VOG0198, VOG0204, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)