Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PDDEGFHF_74 | 450 | 253 | CspA | 1.40e-28 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| PDDEGFHF_74 | 450 | 256 | CspR | 6.07e-28 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PDDEGFHF_1 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_2 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_3 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_4 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_5 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_6 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_7 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_8 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_9 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_10 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_11 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_13 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_22 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_23 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_24 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_25 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_26 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_27 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_28 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_29 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_30 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_31 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_32 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_33 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_34 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_35 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_36 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_37 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_38 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_39 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_40 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_41 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_42 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_43 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_44 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_45 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_46 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_47 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_48 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_49 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_50 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_51 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_52 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_53 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_54 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_55 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_56 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_57 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_58 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_59 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_60 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_61 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_62 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_63 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_64 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_65 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_66 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_67 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_68 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_69 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_70 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_71 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_72 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_73 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_74 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_75 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_76 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_77 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_78 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_79 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_80 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_81 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_82 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_83 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_84 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_85 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_86 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_87 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_88 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_89 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_90 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_91 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_92 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_93 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_94 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_95 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_96 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_97 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_98 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_99 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_101 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_102 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_103 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_104 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_105 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_106 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_107 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_108 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_109 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_110 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_111 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_112 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_113 | 0.0 | 1.0 | 0.0 |
| PDDEGFHF_114 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_116 | 1.0 | 0.0 | 1.0 |
| PDDEGFHF_117 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PDDEGFHF_13 | 39706 | 43009 | False | Siphoviridae | VOG0275, VOG0862, VOG3622, VOG0181 |
| PDDEGFHF_25 | 4932 | 30622 | False | Siphoviridae | VOG1309, VOG0186, VOG0226, VOG4566, VOG0198, VOG1315, VOG0796, VOG10227, VOG0720, VOG4564, VOG10914, VOG4572, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG0727, VOG4599, VOG0648, VOG0641 |
| PDDEGFHF_63 | 56056 | 64549 | True | Siphoviridae | VOG0221, VOG0221, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573 |
| PDDEGFHF_107 | 20537 | 27191 | False | Siphoviridae | VOG0275, VOG9667, VOG8241, VOG2687, VOG4632, VOG4999 |
Phigaro v2.4.0 (Database: Jan. 2024 release)