Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 1 | 0 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MKPLDPAL_13 | 130796 | 131596 | ErmF | ARO:3000498 | ErmF | 99.25 | 100.00 | M17124.1 |
| MKPLDPAL_39 | 40361 | 41263 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
| MKPLDPAL_13 | 136384 | 137757 | tet(Q) | ARO:3000191 | tet(Q) | 96.64 | 69.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MKPLDPAL_39 | 40361 | 41263 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | FR688022 |
| MKPLDPAL_13 | 130796 | 131596 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| MKPLDPAL_13 | 135811 | 137723 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.69 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MKPLDPAL_39 | 40364 | 41263 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
| MKPLDPAL_13 | 130796 | 131593 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_002682030.1 |
| MKPLDPAL_13 | 135811 | 137724 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | INTERNAL_STOP | 97.81 | 99.53 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MKPLDPAL_77 | 1918 | 3111 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 100.00 | 100.00 | BAA77276 |
| MKPLDPAL_77 | 1918 | 3111 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 100.00 | BAA77277 |
| MKPLDPAL_77 | 1918 | 3111 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 100.00 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MKPLDPAL_1 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_2 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_13 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_24 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_35 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_36 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_37 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_38 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_39 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_40 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_41 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_42 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_43 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_44 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_45 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_46 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_47 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_48 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_49 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_50 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_51 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_52 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_53 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_54 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_55 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_56 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_57 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_58 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_59 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_60 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_61 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_62 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_63 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_64 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_65 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_66 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_67 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_68 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_69 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_70 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_71 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_72 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_73 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_74 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_75 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_76 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_77 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_78 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_80 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_81 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_82 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_83 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_84 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_85 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_86 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_87 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_88 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_89 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_90 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_91 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_92 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_93 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_94 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_95 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_96 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_97 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_98 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_99 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_100 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_101 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_102 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_103 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_104 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_105 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_106 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_107 | 1.0 | 0.0 | 1.0 |
| MKPLDPAL_108 | 0.0 | 1.0 | 0.0 |
| MKPLDPAL_119 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)