Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BEMPDHBF_45 | 100886 | 102811 | tet(Q) | ARO:3000191 | tet(Q) | 96.10 | 97.56 | Z21523.1 |
| BEMPDHBF_45 | 95462 | 96286 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| BEMPDHBF_45 | 94459 | 95259 | ErmF | ARO:3000498 | ErmF | 98.87 | 100.00 | M17124.1 |
| BEMPDHBF_45 | 53584 | 54486 | CepA-44 | ARO:3006225 | CepA-44 | 99.33 | 100.00 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BEMPDHBF_45 | 95462 | 96286 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| BEMPDHBF_45 | 94459 | 95259 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.63 | 100.00 | M17808 |
| BEMPDHBF_45 | 53584 | 54486 | cepA-44 | Unknown Beta-lactam | 99.56 | 100.00 | U05885 |
| BEMPDHBF_45 | 100886 | 102811 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 96.83 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BEMPDHBF_45 | 95465 | 96286 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| BEMPDHBF_45 | 53587 | 54486 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.33 | 100.00 | WP_032579291.1 |
| BEMPDHBF_45 | 94459 | 95256 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.25 | 100.00 | WP_002682030.1 |
| BEMPDHBF_45 | 100886 | 102808 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.75 | 100.00 | WP_063856409.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BEMPDHBF_1 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_2 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_3 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_4 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_5 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_6 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_7 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_8 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_9 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_10 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_11 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_12 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_13 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_14 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_15 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_16 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_17 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_18 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_19 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_20 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_21 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_22 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_23 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_24 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_25 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_26 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_27 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_28 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_29 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_30 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_31 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_32 | 1.0 | 0.0 | 1.0 |
| BEMPDHBF_33 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_34 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_35 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_36 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_37 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_38 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_39 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_40 | 1.0 | 0.0 | 1.0 |
| BEMPDHBF_41 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_42 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_44 | 1.0 | 0.0 | 1.0 |
| BEMPDHBF_45 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_46 | 1.0 | 0.0 | 1.0 |
| BEMPDHBF_47 | 1.0 | 0.0 | 1.0 |
| BEMPDHBF_48 | 1.0 | 0.0 | 1.0 |
| BEMPDHBF_49 | 1.0 | 0.0 | 1.0 |
| BEMPDHBF_50 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_51 | 1.0 | 0.0 | 1.0 |
| BEMPDHBF_52 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_53 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_54 | 1.0 | 0.0 | 1.0 |
| BEMPDHBF_55 | 1.0 | 0.0 | 1.0 |
| BEMPDHBF_56 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_57 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_58 | 1.0 | 0.0 | 1.0 |
| BEMPDHBF_59 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_67 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_78 | 0.0 | 1.0 | 0.0 |
| BEMPDHBF_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BEMPDHBF_9 | 12546 | 21401 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)