Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJFCACPA_34 | 34396 | 35196 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
| CJFCACPA_24 | 16145 | 17047 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CJFCACPA_24 | 16145 | 17047 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | FR688022 |
| CJFCACPA_34 | 34396 | 35196 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJFCACPA_24 | 16148 | 17047 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
| CJFCACPA_34 | 34396 | 35193 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| CJFCACPA_54 | 4744 | 5541 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 89.85 | 100.00 | WP_002682030.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CJFCACPA_84 | 758 | 1338 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CJFCACPA_1 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_2 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_13 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_16 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_17 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_18 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_19 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_20 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_21 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_22 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_23 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_24 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_25 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_26 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_27 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_28 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_29 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_30 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_31 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_32 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_33 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_34 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_35 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_36 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_37 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_38 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_39 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_40 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_41 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_42 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_43 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_44 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_45 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_46 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_47 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_48 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_49 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_50 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_51 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_52 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_53 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_54 | 1.0 | 0.0 | 1.0 |
| CJFCACPA_55 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_56 | 1.0 | 0.0 | 1.0 |
| CJFCACPA_57 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_58 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_59 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_60 | 1.0 | 0.0 | 1.0 |
| CJFCACPA_61 | 1.0 | 0.0 | 1.0 |
| CJFCACPA_62 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_63 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_64 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_65 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_66 | 1.0 | 0.0 | 1.0 |
| CJFCACPA_67 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_68 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_69 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_70 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_71 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_72 | 1.0 | 0.0 | 1.0 |
| CJFCACPA_73 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_74 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_75 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_76 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_77 | 1.0 | 0.0 | 1.0 |
| CJFCACPA_78 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_79 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_80 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_81 | 1.0 | 0.0 | 1.0 |
| CJFCACPA_82 | 1.0 | 0.0 | 1.0 |
| CJFCACPA_83 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_84 | 1.0 | 0.0 | 1.0 |
| CJFCACPA_85 | 1.0 | 0.0 | 1.0 |
| CJFCACPA_86 | 1.0 | 0.0 | 1.0 |
| CJFCACPA_87 | 1.0 | 0.0 | 1.0 |
| CJFCACPA_88 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_89 | 1.0 | 0.0 | 1.0 |
| CJFCACPA_90 | 0.0 | 1.0 | 0.0 |
| CJFCACPA_101 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CJFCACPA_19 | 37094 | 44477 | False | Siphoviridae | VOG0025, |
| CJFCACPA_31 | 56278 | 58753 | False | Unknown | VOG5532, |
| CJFCACPA_90 | 12762 | 21518 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)