Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LBDFACMO_88 | 139512 | 140717 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| LBDFACMO_88 | 40698 | 41600 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LBDFACMO_88 | 40698 | 41600 | cepA | Unknown Beta-lactam | 99.78 | 100.00 | FR688022 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LBDFACMO_88 | 40701 | 41600 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
| LBDFACMO_88 | 140742 | 141251 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| LBDFACMO_88 | 139512 | 140714 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| LBDFACMO_67 | 533 | 1113 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBDFACMO_1 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_2 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_13 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_14 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_15 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_16 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_17 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_18 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_19 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_20 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_21 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_22 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_23 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_24 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_25 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_26 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_27 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_28 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_29 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_30 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_31 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_32 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_33 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_34 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_35 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_36 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_37 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_38 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_39 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_40 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_41 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_42 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_43 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_44 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_45 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_46 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_47 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_48 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_49 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_50 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_51 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_52 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_53 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_54 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_55 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_56 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_58 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_59 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_60 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_61 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_62 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_63 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_64 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_65 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_66 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_67 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_68 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_69 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_70 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_71 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_72 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_73 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_74 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_75 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_76 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_77 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_78 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_79 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_80 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_81 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_82 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_83 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_84 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_85 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_86 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_87 | 1.0 | 0.0 | 1.0 |
| LBDFACMO_88 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_89 | 0.0 | 1.0 | 0.0 |
| LBDFACMO_99 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LBDFACMO_15 | 118055 | 124693 | False | Myoviridae | VOG1345, |
Phigaro v2.4.0 (Database: Jan. 2024 release)