Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 1 | 0 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBDADMNG_20 | 35232 | 37178 | tet(Q) | ARO:3000191 | tet(Q) | 97.34 | 98.63 | Z21523.1 |
| GBDADMNG_20 | 29848 | 30648 | ErmF | ARO:3000498 | ErmF | 99.25 | 100.00 | M17124.1 |
| GBDADMNG_17 | 26065 | 26967 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GBDADMNG_20 | 29848 | 30648 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| GBDADMNG_17 | 26065 | 26967 | cepA | Unknown Beta-lactam | 99.78 | 100.00 | FR688022 |
| GBDADMNG_20 | 35232 | 37144 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.16 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GBDADMNG_17 | 26068 | 26967 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
| GBDADMNG_20 | 29848 | 30645 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_002682030.1 |
| GBDADMNG_20 | 35232 | 37145 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.43 | 99.53 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GBDADMNG_1 | 237934 | 239127 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 100.00 | 100.00 | BAA77276 |
| GBDADMNG_1 | 237934 | 239127 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 100.00 | BAA77277 |
| GBDADMNG_1 | 237934 | 239127 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 100.00 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| GBDADMNG_70 | 285 | 964 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GBDADMNG_1 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_2 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_3 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_4 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_5 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_6 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_7 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_8 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_9 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_10 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_11 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_12 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_13 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_14 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_15 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_16 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_17 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_18 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_19 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_20 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_21 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_22 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_23 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_24 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_25 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_26 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_27 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_28 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_29 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_30 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_31 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_32 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_33 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_34 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_35 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_36 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_37 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_38 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_39 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_40 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_41 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_42 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_43 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_45 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_46 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_47 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_48 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_49 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_50 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_51 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_52 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_53 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_54 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_55 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_56 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_57 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_58 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_59 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_60 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_61 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_62 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_63 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_64 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_65 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_66 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_67 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_68 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_69 | 1.0 | 0.0 | 1.0 |
| GBDADMNG_78 | 0.0 | 1.0 | 0.0 |
| GBDADMNG_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GBDADMNG_20 | 15712 | 23985 | False | Unknown | VOG5036 |
Phigaro v2.4.0 (Database: Jan. 2024 release)