Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DDABIKPB_16 | 45485 | 46387 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
| DDABIKPB_27 | 17308 | 18180 | ErmF | ARO:3000498 | ErmF | 98.50 | 109.02 | M17124.1 |
| DDABIKPB_27 | 15096 | 17021 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DDABIKPB_16 | 45485 | 46387 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | FR688022 |
| DDABIKPB_27 | 17308 | 18108 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| DDABIKPB_27 | 15096 | 17021 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DDABIKPB_16 | 45488 | 46387 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
| DDABIKPB_27 | 17311 | 18108 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| DDABIKPB_27 | 15099 | 17021 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DDABIKPB_1 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_2 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_3 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_4 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_5 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_6 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_7 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_8 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_9 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_10 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_11 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_12 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_13 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_14 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_15 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_16 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_17 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_18 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_19 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_20 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_21 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_22 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_23 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_24 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_25 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_26 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_27 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_28 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_29 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_30 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_31 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_32 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_33 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_34 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_35 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_36 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_37 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_38 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_39 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_41 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_42 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_43 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_44 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_45 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_46 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_47 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_48 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_49 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_50 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_51 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_52 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_53 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_54 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_55 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_56 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_57 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_58 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_59 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_60 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_61 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_62 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_63 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_64 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_65 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_66 | 1.0 | 0.0 | 1.0 |
| DDABIKPB_67 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_78 | 0.0 | 1.0 | 0.0 |
| DDABIKPB_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DDABIKPB_8 | 133934 | 142690 | False | Siphoviridae | VOG4581, |
Phigaro v2.4.0 (Database: Jan. 2024 release)