Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GNCPCLFG_93 | 27663 | 26959 | WalR | 1.56e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GNCPCLFG_49 | 106550 | 106353 | CspR | 7.82e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GNCPCLFG_1 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_2 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_7 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_8 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_9 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_10 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_11 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_12 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_13 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_14 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_15 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_16 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_17 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_18 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_19 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_20 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_21 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_22 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_23 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_24 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_25 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_26 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_27 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_28 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_29 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_30 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_31 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_32 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_33 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_34 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_35 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_36 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_37 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_38 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_39 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_40 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_41 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_42 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_43 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_44 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_45 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_46 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_47 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_48 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_49 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_50 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_51 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_52 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_53 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_54 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_55 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_56 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_57 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_58 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_59 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_60 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_61 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_62 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_63 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_64 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_66 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_67 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_68 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_69 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_70 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_71 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_72 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_73 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_75 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_76 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_77 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_78 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_79 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_80 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_81 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_82 | 0.0 | 1.0 | 0.0 |
| GNCPCLFG_83 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_84 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_85 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_86 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_87 | 1.0 | 0.0 | 1.0 |
| GNCPCLFG_93 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GNCPCLFG_24 | 3391 | 12186 | False | Siphoviridae | VOG4694, VOG11003, VOG1638, VOG6238, VOG4566, VOG1292, VOG0083, VOG0083, VOG0650 |
| GNCPCLFG_60 | 2824 | 30047 | False | Siphoviridae | VOG10481, VOG4570, VOG4841, VOG4581, VOG4544, VOG3644, VOG4556, VOG4568, VOG4553, VOG8134, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG2225, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG1637, VOG0703, VOG4918 |
| GNCPCLFG_93 | 91686 | 102043 | False | Siphoviridae | VOG1581, VOG4632, VOG4606, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)