Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 1 | 2 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| BPJMNCOP_115 | 2746 | 4159 | STER_RS05250 | 0.0 | Capsule | Immune modulation | 97.03 | 99.86 | WP_011681165 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BPJMNCOP_1 | 165726 | 165022 | WalR | 1.21e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| BPJMNCOP_153 | 63551 | 63357 | CspR | 4.88e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| BPJMNCOP_153 | 63551 | 63354 | CspA | 7.48e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BPJMNCOP_129 | 6933 | 7868 | rep28 | 936 / 936 | 100.00 | CP005948 |
| BPJMNCOP_133 | 4786 | 5688 | rep38 | 903 / 903 | 99.45 | CP005943 |
| BPJMNCOP_152 | 1267 | 2367 | repUS73 | 1101 / 1101 | 95.55 | CP002654 |
| BPJMNCOP_174 | 1 | 957 | repUS64 | 959 / 954 | 86.97 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BPJMNCOP_1 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_2 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_3 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_4 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_5 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_7 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_8 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_9 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_10 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_11 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_12 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_13 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_14 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_15 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_16 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_17 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_18 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_19 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_20 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_24 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_35 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_46 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_57 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_68 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_79 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_85 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_86 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_87 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_88 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_89 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_90 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_91 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_92 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_93 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_94 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_95 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_96 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_97 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_98 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_99 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_100 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_101 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_102 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_103 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_104 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_105 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_106 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_107 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_108 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_109 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_110 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_111 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_112 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_113 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_114 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_115 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_116 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_117 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_118 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_119 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_120 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_121 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_122 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_123 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_124 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_125 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_126 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_127 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_128 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_129 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_130 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_131 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_132 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_133 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_134 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_135 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_136 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_137 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_138 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_139 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_140 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_141 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_142 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_143 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_144 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_145 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_146 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_147 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_148 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_149 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_150 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_151 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_152 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_153 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_154 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_155 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_156 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_157 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_159 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_160 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_161 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_162 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_163 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_164 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_165 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_166 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_167 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_168 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_169 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_170 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_171 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_172 | 1.0 | 0.0 | 1.0 |
| BPJMNCOP_173 | 0.0 | 1.0 | 0.0 |
| BPJMNCOP_174 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BPJMNCOP_102 | 4153 | 21800 | False | Siphoviridae | VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691 |
| BPJMNCOP_131 | 104783 | 118073 | False | Siphoviridae | VOG0535, VOG0322, VOG6545, VOG0514, VOG8647, VOG0189, VOG11024, VOG4693, VOG10015, VOG0044, VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556 |
Phigaro v2.4.0 (Database: Jan. 2024 release)