Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FCLIMAKD_71 | 291897 | 292601 | WalR | 3.34e-114 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| FCLIMAKD_2 | 79391 | 79585 | CspR | 1.08e-29 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| FCLIMAKD_2 | 79391 | 79588 | CspA | 1.65e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FCLIMAKD_47 | 1175 | 2110 | rep28 | 936 / 936 | 100.00 | CP005948 |
| FCLIMAKD_19 | 834 | 1790 | repUS64 | 958 / 954 | 92.59 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FCLIMAKD_1 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_2 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_3 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_6 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_9 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_10 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_12 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_14 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_15 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_16 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_18 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_19 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_20 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_22 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_23 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_24 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_25 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_26 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_29 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_30 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_32 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_33 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_34 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_35 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_36 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_38 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_40 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_41 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_42 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_45 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_46 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_47 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_48 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_49 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_50 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_52 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_53 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_54 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_55 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_56 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_57 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_60 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_61 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_62 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_63 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_64 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_67 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_68 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_69 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_70 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_71 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_72 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_73 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_74 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_75 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_76 | 1.0 | 0.0 | 1.0 |
| FCLIMAKD_77 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_78 | 0.0 | 1.0 | 0.0 |
| FCLIMAKD_79 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FCLIMAKD_1 | 184836 | 214321 | False | Siphoviridae | VOG0198, VOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG6540, VOG4615, VOG0753, VOG0054 |
| FCLIMAKD_1 | 504761 | 536831 | False | Siphoviridae | VOG0535, VOG0322, VOG6545, VOG5046, VOG0189, VOG0198, VOG6495, VOG2124, VOG3699, VOG10227, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG9583, VOG0724, VOG0799, VOG0725, VOG6163, VOG4633, VOG4599, VOG4619, VOG4856, VOG9640, VOG0804, VOG4705, VOG4918, VOG0753, VOG0054, VOG0866 |
| FCLIMAKD_3 | 763386 | 785127 | False | Siphoviridae | VOG7529, VOG0044, VOG3643, VOG0198, VOG1714, VOG1183, VOG0796, VOG10227, VOG0720, VOG4564, VOG4555, VOG0694, VOG4713, VOG1320, VOG5660, VOG1321, VOG0799, VOG0725, VOG1323, VOG0801, VOG4619, VOG4856 |
| FCLIMAKD_30 | 5749 | 40338 | False | Siphoviridae | VOG8222, VOG0181, VOG8925, VOG0321, VOG4548, VOG9667, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG1298, VOG10015, VOG0044, VOG7416, VOG3643, VOG4673, VOG9281, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888 |
Phigaro v2.4.0 (Database: Jan. 2024 release)