Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HJCPFGOE_108 | 246 | 88 | napD | 5.03e-31 | chaperone | 100.00 | 60.92 | AAC75267 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HJCPFGOE_199 | 241 | 473 | Col(BS512) | 233 / 233 | 100.00 | NC010656 |
| HJCPFGOE_195 | 150 | 347 | Col(IMGS31) | 198 / 198 | 99.49 | NC011406 |
| HJCPFGOE_200 | 739 | 892 | Col156 | 154 / 154 | 94.81 | NC009781 |
| HJCPFGOE_252 | 97 | 216 | ColRNAI | 121 / 130 | 89.26 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HJCPFGOE_10 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_21 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_32 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_43 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_54 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_65 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_76 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_87 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_98 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_109 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_110 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_121 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_132 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_143 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_154 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_165 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_176 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_182 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_183 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_184 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_185 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_186 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_187 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_188 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_189 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_190 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_191 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_194 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_195 | 1.0 | 0.0 | 1.0 |
| HJCPFGOE_196 | 1.0 | 0.0 | 1.0 |
| HJCPFGOE_197 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_198 | 1.0 | 0.0 | 1.0 |
| HJCPFGOE_199 | 1.0 | 0.0 | 1.0 |
| HJCPFGOE_200 | 1.0 | 0.0 | 1.0 |
| HJCPFGOE_201 | 1.0 | 0.0 | 1.0 |
| HJCPFGOE_203 | 1.0 | 0.0 | 1.0 |
| HJCPFGOE_208 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_218 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_229 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_240 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_251 | 0.0 | 1.0 | 0.0 |
| HJCPFGOE_262 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HJCPFGOE_197 | 79475 | 113986 | False | Siphoviridae | VOG4602, VOG6495, VOG4603, VOG4552, VOG0807, VOG11003, VOG1250, VOG8883, VOG9667, VOG0685, VOG0283, VOG4566, VOG2591, VOG4084, VOG3307, VOG3307, VOG6414, VOG0557, VOG0083, VOG0198, VOG10227, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG5904, VOG0801, VOG4619, VOG5008 |
Phigaro v2.4.0 (Database: Jan. 2024 release)