Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KMCKNDLF_280 | 1 | 517 | qnrB19 | Ciprofloxacin | 100.00 | 80.16 | EU432277 |
| KMCKNDLF_280 | 1 | 517 | qnrB5 | Ciprofloxacin | 100.00 | 80.16 | DQ303919 |
| KMCKNDLF_280 | 1 | 517 | qnrB81 | Ciprofloxacin | 100.00 | 80.16 | KX372671 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KMCKNDLF_280 | 2 | 517 | qnrB | QnrB family quinolone resistance pentapeptide repeat protein | PARTIAL_CONTIG_ENDX | 100.00 | 80.37 | WP_012954666.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KMCKNDLF_279 | 1239 | 1471 | Col(BS512) | 233 / 233 | 100.00 | NC010656 |
| KMCKNDLF_30 | 147 | 300 | Col156 | 154 / 154 | 94.81 | NC009781 |
| KMCKNDLF_285 | 1035 | 1296 | Col(MG828) | 262 / 262 | 93.51 | NC008486 |
| KMCKNDLF_280 | 1022 | 1135 | Col440I | 114 / 114 | 91.23 | CP023920.1 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KMCKNDLF_10 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_21 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_32 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_43 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_54 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_65 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_76 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_87 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_98 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_109 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_110 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_121 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_132 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_143 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_154 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_165 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_176 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_187 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_198 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_209 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_220 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_221 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_232 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_243 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_253 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_254 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_255 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_256 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_257 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_258 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_259 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_260 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_261 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_262 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_263 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_264 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_265 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_266 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_267 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_268 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_269 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_270 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_271 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_272 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_273 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_274 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_275 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_276 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_278 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_279 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_280 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_281 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_282 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_283 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_284 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_285 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_286 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_288 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_289 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_290 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_291 | 1.0 | 0.0 | 1.0 |
| KMCKNDLF_293 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_302 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_313 | 0.0 | 1.0 | 0.0 |
| KMCKNDLF_324 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KMCKNDLF_76 | 1953 | 27453 | False | Myoviridae | VOG5087, VOG0861, VOG4705, VOG9945, VOG5763, VOG4862, VOG4691, VOG3894, VOG4885, VOG4865, VOG3636, VOG3892, VOG3891, VOG3890, VOG5612, VOG4870, VOG1900, VOG3888, VOG4623, VOG4572, VOG4555, VOG4564, VOG0720, VOG4544, VOG1517, VOG1327, VOG1326, VOG4972 |
| KMCKNDLF_110 | 5984 | 32552 | False | Siphoviridae | VOG4633, VOG4760, VOG4586, VOG0207, VOG8997, VOG10939, VOG0204, VOG4553, VOG4573, VOG4556, VOG3644, VOG1886, VOG4581, VOG4841, VOG0198, VOG0327, VOG2188, VOG6970, VOG3307, VOG10510, VOG4609, VOG4609, VOG4632, VOG6545, VOG0322, VOG10660, VOG4548, VOG0321 |
| KMCKNDLF_272 | 72976 | 92762 | False | Siphoviridae | VOG9502, VOG0641, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG4544, VOG1259, VOG4571, VOG0198, VOG4548, VOG0327, VOG4606, VOG0026, VOG0021, VOG1047 |
| KMCKNDLF_283 | 53347 | 55133 | False | Unknown | VOG0248, VOG9667 |
| KMCKNDLF_283 | 61836 | 82206 | False | Siphoviridae | VOG4693, VOG0198, VOG3477, VOG0796, VOG4544, VOG0691, VOG0692, VOG5047, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG8263 |
Phigaro v2.4.0 (Database: Jan. 2024 release)