Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PHGJJLCA_478 | 2386 | 2776 | qnrB5 | Ciprofloxacin | 100.00 | 60.62 | DQ303919 |
| PHGJJLCA_478 | 2386 | 2776 | qnrB81 | Ciprofloxacin | 100.00 | 60.62 | KX372671 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PHGJJLCA_478 | 2386 | 2775 | qnrB | QnrB family quinolone resistance pentapeptide repeat protein | PARTIAL_CONTIG_ENDX | 100.00 | 60.75 | WP_012954666.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PHGJJLCA_221 | 262 | 2 | STM14_RS15270 | 1.62e-60 | NADH-quinone oxidoreductase subunit | 96.55 | 63.97 | ACY89854 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PHGJJLCA_485 | 707 | 939 | Col(BS512) | 233 / 233 | 100.00 | NC010656 |
| PHGJJLCA_503 | 164 | 317 | Col156 | 154 / 154 | 94.81 | NC009781 |
| PHGJJLCA_478 | 1769 | 1882 | Col440I | 114 / 114 | 91.23 | CP023920.1 |
| PHGJJLCA_482 | 1225 | 1344 | ColRNAI | 121 / 130 | 89.26 | DQ298019 |
| PHGJJLCA_240 | 23709 | 24256 | rep38 | 553 / 903 | 83.73 | CP005943 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PHGJJLCA_1 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_2 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_3 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_4 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_10 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_20 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_31 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_42 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_53 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_63 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_74 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_85 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_96 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_107 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_108 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_119 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_130 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_141 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_152 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_163 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_174 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_185 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_195 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_206 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_217 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_218 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_229 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_240 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_251 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_262 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_273 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_284 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_295 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_306 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_317 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_328 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_329 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_340 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_351 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_362 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_373 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_384 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_395 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_406 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_417 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_428 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_439 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_440 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_451 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_452 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_453 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_454 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_455 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_456 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_457 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_458 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_459 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_460 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_461 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_462 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_463 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_464 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_465 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_466 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_467 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_468 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_469 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_470 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_471 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_472 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_473 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_474 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_476 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_477 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_478 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_479 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_480 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_481 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_482 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_483 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_484 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_485 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_487 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_488 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_489 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_490 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_491 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_492 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_493 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_494 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_495 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_496 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_497 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_498 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_499 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_501 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_503 | 1.0 | 0.0 | 1.0 |
| PHGJJLCA_504 | 0.0 | 1.0 | 0.0 |
| PHGJJLCA_505 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)