Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HIPACNKA_111 | 53864 | 54568 | WalR | 8.59e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| HIPACNKA_64 | 34669 | 34472 | CspR | 7.49e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HIPACNKA_1 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_2 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_3 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_4 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_5 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_6 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_7 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_8 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_9 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_10 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_11 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_13 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_14 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_15 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_16 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_17 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_18 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_19 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_20 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_21 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_22 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_23 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_24 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_25 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_26 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_27 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_28 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_29 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_30 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_31 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_32 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_33 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_34 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_35 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_36 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_37 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_38 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_39 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_40 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_41 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_42 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_43 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_44 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_45 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_46 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_47 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_48 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_49 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_50 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_51 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_52 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_53 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_54 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_55 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_56 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_57 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_58 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_59 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_60 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_61 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_62 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_63 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_64 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_66 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_69 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_74 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_77 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_82 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_85 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_87 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_88 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_92 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_94 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_95 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_96 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_97 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_98 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_99 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_100 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_101 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_102 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_103 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_104 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_105 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_106 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_107 | 1.0 | 0.0 | 1.0 |
| HIPACNKA_108 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_109 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_110 | 0.0 | 1.0 | 0.0 |
| HIPACNKA_111 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HIPACNKA_9 | 60740 | 70150 | False | Siphoviridae | VOG4632, VOG4609, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556 |
| HIPACNKA_52 | 152 | 20734 | False | Siphoviridae | VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4605, VOG4599, VOG6455, VOG7896, VOG0861, VOG7017, VOG9955, VOG6540, VOG0703, VOG4918, VOG4605 |
| HIPACNKA_64 | 2717 | 14135 | False | Siphoviridae | VOG4570, VOG0198, VOG3643, VOG0152, VOG9741, VOG0536, VOG9860, VOG11003, VOG8987, VOG1638, VOG6238, VOG4566, VOG0186, VOG1309 |
Phigaro v2.4.0 (Database: Jan. 2024 release)