Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IEDOFLIF_113 | 104480 | 105334 | ErmX | ARO:3000596 | ErmX | 90.14 | 100.00 | M36726.1 |
| IEDOFLIF_156 | 49983 | 53546 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IEDOFLIF_113 | 104572 | 105334 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.74 | 100.00 | U21300 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IEDOFLIF_113 | 104483 | 105334 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | BLASTX | 99.65 | 100.00 | WP_011117480.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IEDOFLIF_100 | 728 | 960 | Col(BS512) | 233 / 233 | 100.00 | NC010656 |
| IEDOFLIF_131 | 53 | 206 | Col156 | 154 / 154 | 94.81 | NC009781 |
| IEDOFLIF_98 | 971 | 1232 | Col(MG828) | 262 / 262 | 93.51 | NC008486 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IEDOFLIF_11 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_22 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_33 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_44 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_55 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_66 | 1.0 | 0.0 | 1.0 |
| IEDOFLIF_77 | 1.0 | 0.0 | 1.0 |
| IEDOFLIF_88 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_91 | 1.0 | 0.0 | 1.0 |
| IEDOFLIF_93 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_94 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_95 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_96 | 1.0 | 0.0 | 1.0 |
| IEDOFLIF_97 | 1.0 | 0.0 | 1.0 |
| IEDOFLIF_98 | 1.0 | 0.0 | 1.0 |
| IEDOFLIF_99 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_100 | 1.0 | 0.0 | 1.0 |
| IEDOFLIF_101 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_103 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_113 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_124 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_134 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_145 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_156 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_167 | 0.0 | 1.0 | 0.0 |
| IEDOFLIF_178 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IEDOFLIF_103 | 43162 | 69677 | False | Siphoviridae | VOG5946, VOG0136, VOG10957, VOG3416, VOG9722, VOG4633, VOG5793, VOG5601, VOG1581, VOG5504, VOG4553, VOG4576, VOG0720, VOG5101, VOG2560, VOG9852, VOG4841, VOG2038, VOG0052, VOG2538 |
Phigaro v2.4.0 (Database: Jan. 2024 release)