Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OGABOPKC_221 | 372490 | 376053 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
| OGABOPKC_221 | 234714 | 235085 | Mycobacterium tuberculosis rpsL mutations conferring resistance to Streptomycin | ARO:3003395 | Mtub_rpsL_STR | 82.93 | 99.19 | NC_000962.3 |
| OGABOPKC_221 | 219110 | 221029 | tet(O) | ARO:3000190 | tet(O) | 99.06 | 100.00 | M18896.2 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OGABOPKC_221 | 219110 | 221029 | tet(O) | Doxycycline, Tetracycline, Minocycline | 99.69 | 100.00 | M18896 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OGABOPKC_221 | 219110 | 221026 | tet(O) | tetracycline resistance ribosomal protection protein Tet(O) | BLASTX | 99.69 | 100.00 | WP_050824634.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OGABOPKC_349 | 1 | 161 | Col(BS512) | 161 / 233 | 100.00 | NC010656 |
| OGABOPKC_88 | 810 | 1286 | rep10 | 477 / 477 | 100.00 | GQ900442 |
| OGABOPKC_55 | 192 | 449 | Col(MG828) | 258 / 262 | 94.19 | NC008486 |
| OGABOPKC_209 | 392 | 494 | ColRNAI | 104 / 130 | 91.35 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OGABOPKC_11 | 0.0 | 1.0 | 0.0 |
| OGABOPKC_22 | 0.0 | 1.0 | 0.0 |
| OGABOPKC_55 | 1.0 | 0.0 | 1.0 |
| OGABOPKC_66 | 1.0 | 0.0 | 1.0 |
| OGABOPKC_77 | 1.0 | 0.0 | 1.0 |
| OGABOPKC_88 | 1.0 | 0.0 | 1.0 |
| OGABOPKC_111 | 0.0 | 1.0 | 0.0 |
| OGABOPKC_221 | 0.0 | 1.0 | 0.0 |
| OGABOPKC_296 | 0.0 | 1.0 | 0.0 |
| OGABOPKC_307 | 0.0 | 1.0 | 0.0 |
| OGABOPKC_318 | 0.0 | 1.0 | 0.0 |
| OGABOPKC_329 | 0.0 | 1.0 | 0.0 |
| OGABOPKC_340 | 0.0 | 1.0 | 0.0 |
| OGABOPKC_351 | 0.0 | 1.0 | 0.0 |
| OGABOPKC_362 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)