Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 1 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IJKJONAC_77 | 315541 | 318867 | Bifidobacterium bifidum ileS conferring resistance to mupirocin | ARO:3003730 | Bbif_ileS_MUP | 99.37 | 100.09 | CP001840.1 |
| IJKJONAC_58 | 73126 | 76758 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 91.22 | 102.02 | NC_008618.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IJKJONAC_18 | 4 | 219 | pspD | 7.70e-42 | phage-shock protein | 87.50 | 100.00 | ACY88505 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IJKJONAC_69 | 233 | 425 | ColpVC | 193 / 193 | 96.89 | JX133088 |
| IJKJONAC_65 | 350 | 557 | Col(MG828) | 208 / 262 | 94.23 | NC008486 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IJKJONAC_11 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_22 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_33 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_44 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_53 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_54 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_55 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_56 | 1.0 | 0.0 | 1.0 |
| IJKJONAC_57 | 1.0 | 0.0 | 1.0 |
| IJKJONAC_58 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_59 | 1.0 | 0.0 | 1.0 |
| IJKJONAC_60 | 1.0 | 0.0 | 1.0 |
| IJKJONAC_61 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_67 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_77 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_88 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_99 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_110 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_121 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_132 | 0.0 | 1.0 | 0.0 |
| IJKJONAC_143 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IJKJONAC_67 | 217347 | 241891 | False | Siphoviridae | VOG0991, VOG3578, VOG4599, VOG4605, VOG5793, VOG5601, VOG1581, VOG0880, VOG4553, VOG4576, VOG0720, VOG5101, VOG2560, VOG9852, VOG4841, VOG0376, VOG2545, VOG2038, VOG2538, VOG0943, VOG5782 |
| IJKJONAC_67 | 251486 | 267635 | False | Siphoviridae | VOG4602, VOG4602, VOG0275, VOG4571, VOG2842, VOG5539, VOG3594, VOG1724, VOG9874, VOG0822 |
| IJKJONAC_110 | 93911 | 114368 | False | Myoviridae | VOG5012, VOG2090, VOG8190, VOG0052, VOG0382, VOG5689, VOG4548, VOG0384 |
| IJKJONAC_121 | 57542 | 70589 | False | Siphoviridae | VOG8440, VOG2090, VOG11075, VOG0585, VOG3304, VOG0010, VOG4602 |
Phigaro v2.4.0 (Database: Jan. 2024 release)