Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NJNGHJAD_65 | 6979 | 6782 | CspA | 2.29e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
| NJNGHJAD_65 | 6979 | 6785 | CspR | 6.79e-30 | cold shock protein | 86.15 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NJNGHJAD_2 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_3 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_4 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_5 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_6 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_8 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_9 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_10 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_11 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_12 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_13 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_15 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_16 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_17 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_18 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_19 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_20 | 1.0 | 0.0 | 1.0 |
| NJNGHJAD_21 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_22 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_23 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_24 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_25 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_26 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_27 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_28 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_29 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_30 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_31 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_32 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_33 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_34 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_35 | 1.0 | 0.0 | 1.0 |
| NJNGHJAD_36 | 1.0 | 0.0 | 1.0 |
| NJNGHJAD_37 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_38 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_39 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_40 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_41 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_42 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_43 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_45 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_46 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_47 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_48 | 1.0 | 0.0 | 1.0 |
| NJNGHJAD_49 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_50 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_51 | 1.0 | 0.0 | 1.0 |
| NJNGHJAD_52 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_53 | 1.0 | 0.0 | 1.0 |
| NJNGHJAD_54 | 1.0 | 0.0 | 1.0 |
| NJNGHJAD_55 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_56 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_57 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_58 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_59 | 1.0 | 0.0 | 1.0 |
| NJNGHJAD_60 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_61 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_62 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_63 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_64 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_65 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_66 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_67 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_68 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_70 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_72 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_73 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_74 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_75 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_76 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_77 | 1.0 | 0.0 | 1.0 |
| NJNGHJAD_78 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_79 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_81 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_82 | 1.0 | 0.0 | 1.0 |
| NJNGHJAD_83 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_84 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_85 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_86 | 0.0 | 1.0 | 0.0 |
| NJNGHJAD_89 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NJNGHJAD_28 | 9496 | 16370 | False | Myoviridae | VOG0083, VOG0382, VOG0384, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)