Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 1 | 2.45 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BFMLJHHI_66 | 49983 | 53546 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
| BFMLJHHI_199 | 185 | 2104 | tet(W) | ARO:3000194 | tet(W) | 100.00 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BFMLJHHI_199 | 185 | 2104 | tet(W) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | AJ427422 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BFMLJHHI_199 | 188 | 2104 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_002586627.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BFMLJHHI_9 | 1 | 149 | virulence_ecoli | traT | Outer membrane protein complement resistance | 99.33 | 84.18 | AIGY01000005 |
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BFMLJHHI_175 | 227 | 6 | STM14_RS07735 (lppB) | 5.02e-39 | hypothetical protein | 85.14 | 93.67 | ACY88148 |
| BFMLJHHI_175 | 230 | 6 | STM14_RS07740 (lpp) | 2.41e-47 | murein lipoprotein | 98.67 | 96.15 | ACY88149 |
| BFMLJHHI_2 | 291 | 1 | YbeY | 5.04e-46 | essential endoribonuclease | 85.57 | 62.99 | AAF94122 |
| BFMLJHHI_2 | 291 | 1 | ybeY | 2.57e-43 | endoribonuclease | 82.47 | 61.78 | CAL13026 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| BFMLJHHI_207 | 584 | 841 | Col(MG828) | 258 / 262 | 94.19 | NC008486 |
| BFMLJHHI_220 | 1 | 179 | Col8282 | 179 / 207 | 88.83 | DQ995352 |
| BFMLJHHI_241 | 1 | 182 | Col(BS512) | 185 / 233 | 81.62 | NC010656 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| BFMLJHHI_11 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_22 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_33 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_44 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_55 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_66 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_77 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_88 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_99 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_110 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_111 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_122 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_133 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_144 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_155 | 1.0 | 0.0 | 1.0 |
| BFMLJHHI_166 | 1.0 | 0.0 | 1.0 |
| BFMLJHHI_177 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_188 | 1.0 | 0.0 | 1.0 |
| BFMLJHHI_198 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_199 | 1.0 | 0.0 | 1.0 |
| BFMLJHHI_201 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_202 | 1.0 | 0.0 | 1.0 |
| BFMLJHHI_203 | 1.0 | 0.0 | 1.0 |
| BFMLJHHI_204 | 1.0 | 0.0 | 1.0 |
| BFMLJHHI_205 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_207 | 1.0 | 0.0 | 1.0 |
| BFMLJHHI_208 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_212 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_222 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_233 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_244 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_255 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_266 | 0.0 | 1.0 | 0.0 |
| BFMLJHHI_277 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| BFMLJHHI_44 | 8869 | 34585 | False | Siphoviridae | VOG0565, VOG1125, VOG4545, VOG4557, VOG1581, VOG1887, VOG3434, VOG4555, VOG2806, VOG0720, VOG5101, VOG1574, VOG6459, VOG4841, VOG6495, VOG6357, VOG9502 |
Phigaro v2.4.0 (Database: Jan. 2024 release)