Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ENPADCLE_3 | 105840 | 105646 | CspA | 1.57e-27 | cold shock protein | 83.08 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ENPADCLE_1 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_2 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_3 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_4 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_5 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_6 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_7 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_8 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_9 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_10 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_11 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_12 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_13 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_14 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_15 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_16 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_17 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_18 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_19 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_20 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_21 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_22 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_23 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_24 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_26 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_27 | 1.0 | 0.0 | 1.0 |
| ENPADCLE_28 | 1.0 | 0.0 | 1.0 |
| ENPADCLE_29 | 0.0 | 1.0 | 0.0 |
| ENPADCLE_30 | 1.0 | 0.0 | 1.0 |
| ENPADCLE_31 | 1.0 | 0.0 | 1.0 |
| ENPADCLE_32 | 1.0 | 0.0 | 1.0 |
| ENPADCLE_33 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ENPADCLE_2 | 88471 | 119154 | False | Siphoviridae | VOG9667, VOG3622, VOG9500, VOG6179, VOG11003, VOG9706, VOG5878, VOG0275, VOG0195, VOG5280, VOG2246, VOG5317, VOG0686, VOG6140, VOG0198, VOG10604, VOG0866, VOG4841, VOG4581, VOG9312, VOG0866, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG0209, VOG8263, VOG0801, VOG3462, VOG5560 |
Phigaro v2.4.0 (Database: Jan. 2024 release)