Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
BHAMINKI_3299186299890WalR2.07e-114transcriptional regulatory protein84.25100.00EPH95667
BHAMINKI_2069307124CspR9.24e-31cold shock protein84.6198.48AAO82613
BHAMINKI_2069307127CspA1.42e-30cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
BHAMINKI_2350565686rep38632 / 90391.30CP005943

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
BHAMINKI_10.01.00.0
BHAMINKI_20.01.00.0
BHAMINKI_30.01.00.0
BHAMINKI_40.01.00.0
BHAMINKI_50.01.00.0
BHAMINKI_60.01.00.0
BHAMINKI_70.01.00.0
BHAMINKI_80.01.00.0
BHAMINKI_90.01.00.0
BHAMINKI_100.01.00.0
BHAMINKI_110.01.00.0
BHAMINKI_120.01.00.0
BHAMINKI_131.00.01.0
BHAMINKI_140.01.00.0
BHAMINKI_150.01.00.0
BHAMINKI_160.01.00.0
BHAMINKI_170.01.00.0
BHAMINKI_180.01.00.0
BHAMINKI_190.01.00.0
BHAMINKI_200.01.00.0
BHAMINKI_211.00.01.0
BHAMINKI_221.00.01.0
BHAMINKI_231.00.01.0
BHAMINKI_241.00.01.0
BHAMINKI_251.00.01.0
BHAMINKI_261.00.01.0
BHAMINKI_271.00.01.0
BHAMINKI_281.00.01.0
BHAMINKI_290.01.00.0
BHAMINKI_301.00.01.0
BHAMINKI_311.00.01.0
BHAMINKI_321.00.01.0
BHAMINKI_331.00.01.0
BHAMINKI_341.00.01.0
BHAMINKI_361.00.01.0
BHAMINKI_371.00.01.0
BHAMINKI_391.00.01.0
BHAMINKI_401.00.01.0
BHAMINKI_411.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
BHAMINKI_1220472244013FalseSiphoviridaeVOG4581, VOG1886, VOG0202, VOG4556, VOG4568, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG5904, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG0753
BHAMINKI_33109035764FalseSiphoviridaeVOG4632, VOG7169, VOG4565, VOG4552, VOG3699, VOG9667
BHAMINKI_4149888184370FalseSiphoviridaeVOG0054, VOG1637, VOG8294, VOG3498, VOG10608, VOG1335, VOG4545, VOG1334, VOG1333, VOG4634, VOG0704, VOG1330, VOG4713, VOG1887, VOG3434, VOG10914, VOG4564, VOG7038, VOG0720, VOG4544, VOG0796, VOG0198, VOG4693, VOG4566, VOG0186, VOG1309, VOG7298, VOG0181, VOG6495
BHAMINKI_4196037206644FalseSiphoviridaeVOG0198, VOG0204, VOG4568, VOG4556, VOG2935, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609
BHAMINKI_10514040311FalseSiphoviridaeVOG0685, VOG0283, VOG0226, VOG0514, VOG4799, VOG0198, VOG4841, VOG0741, VOG0468, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG6163, VOG4605, VOG4599, VOG10957, VOG8870, VOG9998, VOG4783, VOG4615, VOG0753, VOG0054, VOG1521, VOG1191

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements