Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 6 | 6.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| INBNGHJH_7 | 41786 | 40635 | tufA | 0.0 | elongation factor Tu | 85.94 | 97.21 | AHM69299 |
| INBNGHJH_7 | 92005 | 91136 | pdxS | 9.81e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| INBNGHJH_1 | 1099920 | 1100696 | CodY | 4.35e-127 | nutrient-responsive regulator | 81.85 | 100.00 | ACJ80679 |
| INBNGHJH_1 | 1099920 | 1100696 | codY | 1.41e-123 | global regulator and isoleucine sensor | 80.69 | 100.00 | ASW39076 |
| INBNGHJH_1 | 727059 | 726490 | ClpP | 8.61e-103 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| INBNGHJH_1 | 827616 | 828008 | spxA1 | 1.50e-71 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| INBNGHJH_1 | 827616 | 828008 | spx | 3.25e-66 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| INBNGHJH_7 | 139692 | 139450 | SpoVG | 8.51e-38 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| INBNGHJH_1 | 0.0 | 1.0 | 0.0 |
| INBNGHJH_7 | 0.0 | 1.0 | 0.0 |
| INBNGHJH_8 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)