Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CLLMBJCN_2 | 55976 | 56680 | WalR | 2.74e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CLLMBJCN_41 | 3799 | 3996 | CspR | 1.43e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CLLMBJCN_1 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_2 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_3 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_4 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_5 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_6 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_7 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_8 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_9 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_10 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_11 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_12 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_13 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_14 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_15 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_16 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_17 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_18 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_19 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_20 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_21 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_22 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_23 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_24 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_25 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_26 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_27 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_28 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_29 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_30 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_31 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_32 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_33 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_34 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_35 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_36 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_37 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_38 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_39 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_40 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_41 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_42 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_43 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_44 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_45 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_46 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_47 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_48 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_49 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_50 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_51 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_52 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_53 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_54 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_55 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_57 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_58 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_59 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_60 | 0.0 | 1.0 | 0.0 |
| CLLMBJCN_61 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_62 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_63 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_64 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_69 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_70 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_71 | 1.0 | 0.0 | 1.0 |
| CLLMBJCN_72 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CLLMBJCN_15 | 51282 | 60878 | False | Siphoviridae | VOG4589, VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4609, VOG4632, VOG1581 |
| CLLMBJCN_20 | 28154 | 34950 | False | Unknown | VOG5532, VOG4549, VOG4570, VOG4570, VOG5088, VOG0198 |
| CLLMBJCN_21 | 12829 | 37838 | False | Siphoviridae | VOG0861, VOG4705, VOG4025, VOG4683, VOG4828, VOG4633, VOG0083, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG10868, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG0531, VOG4549, VOG10904, VOG4570 |
| CLLMBJCN_26 | 1038 | 26049 | False | Siphoviridae | VOG4570, VOG0796, VOG10227, VOG0720, VOG4564, VOG0045, VOG4555, VOG0694, VOG1322, VOG4713, VOG1320, VOG9583, VOG1321, VOG0799, VOG0725, VOG1323, VOG4545, VOG0801, VOG4619, VOG4856, VOG0861, VOG7017, VOG0602, VOG4649, VOG0979 |
| CLLMBJCN_28 | 15592 | 23715 | False | Unknown | VOG9667, VOG4846, VOG1309, VOG0186, VOG4855, VOG0226, VOG10904, VOG11003, VOG9860, VOG0536, VOG9741 |
Phigaro v2.4.0 (Database: Jan. 2024 release)