Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 1 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PNHAEGEO_12 | 5783 | 6829 | waaB | 0.0 | Capsule | Immune modulation | 96.22 | 99.81 | WP_157822584 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PNHAEGEO_3 | 15084 | 14383 | WalR | 3.27e-108 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PNHAEGEO_38 | 265 | 1194 | rep28 | 930 / 930 | 97.85 | CP003162 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PNHAEGEO_1 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_2 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_3 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_4 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_5 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_6 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_7 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_8 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_9 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_10 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_11 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_12 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_13 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_14 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_15 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_16 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_17 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_18 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_19 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_20 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_21 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_22 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_23 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_24 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_25 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_26 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_27 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_28 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_29 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_30 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_31 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_32 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_33 | 0.0 | 1.0 | 0.0 |
| PNHAEGEO_34 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_35 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_36 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_37 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_38 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_39 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_40 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_41 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_42 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_43 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_45 | 1.0 | 0.0 | 1.0 |
| PNHAEGEO_46 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PNHAEGEO_1 | 217933 | 253007 | False | Myoviridae | VOG1309, VOG0186, VOG7236, VOG4693, VOG6005, VOG0044, VOG4010, VOG0198, VOG0796, VOG10227, VOG1912, VOG4564, VOG4865, VOG1915, VOG2779, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6131, VOG5068, VOG6163, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4845, VOG4894, VOG0565, VOG3298 |
| PNHAEGEO_13 | 4801 | 53483 | False | Myoviridae | VOG10391, VOG0275, VOG0801, VOG0774, VOG8483, VOG0862, VOG9667, VOG2124, VOG7724, VOG3246, VOG0650, VOG11003, VOG0685, VOG0322, VOG0226, VOG10904, VOG4799, VOG0025, VOG0514, VOG6005, VOG7484, VOG0822, VOG9507, VOG5545, VOG0536, VOG4010, VOG0198, VOG5446, VOG0796, VOG0275, VOG4544, VOG0720, VOG4564, VOG4555, VOG3434, VOG1887, VOG4710, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG4910, VOG1956, VOG1433, VOG1348, VOG0573, VOG4691, VOG4845 |
| PNHAEGEO_19 | 2899 | 24868 | False | Myoviridae | VOG0573, VOG1348, VOG1433, VOG5904, VOG4699, VOG1352, VOG1883, VOG1353, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG5532, VOG0198, VOG0149, VOG4010, VOG3643, VOG0044 |
Phigaro v2.4.0 (Database: Jan. 2024 release)