Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DCNJDIJC_26 | 6277 | 5570 | WalR | 5.15e-117 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| DCNJDIJC_1 | 118111 | 118308 | CspR | 3.18e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| DCNJDIJC_1 | 118111 | 118305 | CspA | 1.55e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DCNJDIJC_1 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_2 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_3 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_4 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_5 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_6 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_7 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_8 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_9 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_10 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_11 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_12 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_13 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_14 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_15 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_16 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_17 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_18 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_19 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_20 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_21 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_22 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_23 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_24 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_25 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_26 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_27 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_28 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_29 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_30 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_31 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_32 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_33 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_34 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_35 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_36 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_37 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_38 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_39 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_40 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_41 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_42 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_43 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_45 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_47 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_48 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_49 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_50 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_51 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_52 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_54 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_56 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_58 | 1.0 | 0.0 | 1.0 |
| DCNJDIJC_67 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_72 | 0.0 | 1.0 | 0.0 |
| DCNJDIJC_73 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DCNJDIJC_23 | 25499 | 56517 | False | Siphoviridae | VOG0641, VOG5008, VOG5904, VOG4633, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG4572, VOG10914, VOG4564, VOG0720, VOG10227, VOG0796, VOG4706, VOG10597, VOG1676, VOG0198, VOG5545, VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0321, VOG8039, VOG3947, VOG1638, VOG6238, VOG4552, VOG6495 |
| DCNJDIJC_45 | 13924 | 33959 | False | Siphoviridae | VOG1637, VOG5008, VOG4828, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0866 |
Phigaro v2.4.0 (Database: Jan. 2024 release)