Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NPANDNHF_27 | 6592 | 5885 | WalR | 5.26e-117 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| NPANDNHF_34 | 58997 | 59194 | CspR | 1.77e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| NPANDNHF_34 | 58997 | 59191 | CspA | 8.65e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NPANDNHF_1 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_2 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_3 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_4 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_5 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_6 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_7 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_8 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_9 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_10 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_11 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_12 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_13 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_14 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_15 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_16 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_17 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_18 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_19 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_20 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_21 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_22 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_23 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_24 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_25 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_26 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_27 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_28 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_29 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_30 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_31 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_32 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_33 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_34 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_35 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_36 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_37 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_38 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_39 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_40 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_42 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_43 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_44 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_45 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_46 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_48 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_50 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_56 | 1.0 | 0.0 | 1.0 |
| NPANDNHF_65 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_66 | 0.0 | 1.0 | 0.0 |
| NPANDNHF_67 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NPANDNHF_2 | 1971 | 22836 | False | Siphoviridae | VOG4841, VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG6163, VOG4633, VOG4828, VOG5008, VOG5008 |
| NPANDNHF_4 | 3320 | 25912 | False | Siphoviridae | VOG0198, VOG4841, VOG4581, VOG1886, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG5852, VOG4545, VOG0801, VOG3462, VOG4190, VOG4856, VOG5008, VOG10223, VOG3390, VOG4705, VOG1637 |
| NPANDNHF_65 | 7155 | 11347 | False | Siphoviridae | VOG0025, VOG4799, VOG0514, VOG6545, VOG0322 |
| NPANDNHF_66 | 1820 | 12282 | False | Siphoviridae | VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG9583, VOG0207, VOG4586 |
Phigaro v2.4.0 (Database: Jan. 2024 release)