Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FIODJOJC_3 | 6142 | 5435 | WalR | 1.15e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| FIODJOJC_33 | 76064 | 76261 | CspR | 2.56e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| FIODJOJC_33 | 76064 | 76258 | CspA | 1.25e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FIODJOJC_1 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_2 | 1.0 | 0.0 | 1.0 |
| FIODJOJC_3 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_4 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_5 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_6 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_7 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_8 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_9 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_10 | 1.0 | 0.0 | 1.0 |
| FIODJOJC_11 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_12 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_13 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_14 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_15 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_16 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_17 | 1.0 | 0.0 | 1.0 |
| FIODJOJC_18 | 1.0 | 0.0 | 1.0 |
| FIODJOJC_21 | 1.0 | 0.0 | 1.0 |
| FIODJOJC_23 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_33 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_34 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_35 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_36 | 0.0 | 1.0 | 0.0 |
| FIODJOJC_37 | 1.0 | 0.0 | 1.0 |
| FIODJOJC_38 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FIODJOJC_1 | 2607 | 36024 | False | Siphoviridae | VOG3947, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0327, VOG5998, VOG5562, VOG0275, VOG8279, VOG0195, VOG2246, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG0686, VOG0638, VOG10914, VOG4572, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG5904, VOG5008, VOG1637, VOG0703, VOG8294 |
| FIODJOJC_12 | 174685 | 180917 | False | Myoviridae | VOG0275, VOG9667, VOG3699, VOG4552, VOG0831, VOG5755, VOG8353, VOG7006 |
Phigaro v2.4.0 (Database: Jan. 2024 release)