Probiotic potential risk score


ARGs VFs PGs PPRS
0022.00

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
No hit found

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
No hit found

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
No hit found

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
BIFABIKF_2117367118071WalR6.95e-115transcriptional regulatory protein84.25100.00EPH95667
BIFABIKF_47106915107109CspR8.63e-30cold shock protein84.6198.48AAO82613
BIFABIKF_47106915107112CspA1.32e-29cold shock protein84.85100.00CAA62903

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
BIFABIKF_292091162repUS64954 / 95499.37JN601038
BIFABIKF_151706018094rep381045 / 110481.53CP002655

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
BIFABIKF_10.01.00.0
BIFABIKF_20.01.00.0
BIFABIKF_30.01.00.0
BIFABIKF_40.01.00.0
BIFABIKF_50.01.00.0
BIFABIKF_60.01.00.0
BIFABIKF_70.01.00.0
BIFABIKF_80.01.00.0
BIFABIKF_91.00.01.0
BIFABIKF_101.00.01.0
BIFABIKF_110.01.00.0
BIFABIKF_120.01.00.0
BIFABIKF_131.00.01.0
BIFABIKF_140.01.00.0
BIFABIKF_151.00.01.0
BIFABIKF_160.01.00.0
BIFABIKF_171.00.01.0
BIFABIKF_181.00.01.0
BIFABIKF_191.00.01.0
BIFABIKF_201.00.01.0
BIFABIKF_211.00.01.0
BIFABIKF_220.01.00.0
BIFABIKF_231.00.01.0
BIFABIKF_241.00.01.0
BIFABIKF_250.01.00.0
BIFABIKF_261.00.01.0
BIFABIKF_281.00.01.0
BIFABIKF_291.00.01.0
BIFABIKF_301.00.01.0
BIFABIKF_321.00.01.0
BIFABIKF_330.01.00.0
BIFABIKF_341.00.01.0
BIFABIKF_351.00.01.0
BIFABIKF_361.00.01.0
BIFABIKF_371.00.01.0
BIFABIKF_440.01.00.0
BIFABIKF_460.01.00.0
BIFABIKF_470.01.00.0
BIFABIKF_480.01.00.0
BIFABIKF_490.01.00.0
BIFABIKF_500.01.00.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
BIFABIKF_44192341227482FalseSiphoviridaeVOG1637, VOG8294, VOG4705, VOG0804, VOG0870, VOG8438, VOG4619, VOG0801, VOG6163, VOG0701, VOG9763, VOG6548, VOG0697, VOG0696, VOG0695, VOG4711, VOG9317, VOG0692, VOG0691, VOG3699, VOG0198, VOG0044, VOG4693, VOG4552, VOG4566, VOG0226, VOG0283, VOG0535, VOG0650, VOG3549, VOG8615, VOG6139, VOG9667, VOG6495, VOG4602
BIFABIKF_46149932158516FalseSiphoviridaeVOG4568, VOG4556, VOG4544, VOG4581, VOG4841, VOG0205
BIFABIKF_48146273150947FalseUnknownVOG4675, VOG9667, VOG3699, VOG4552, VOG4565, VOG7169
BIFABIKF_495498677051FalseSiphoviridaeVOG4841, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0660, VOG4605, VOG4599

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements