Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IKBADNFK_140 | 91835 | 92539 | WalR | 5.29e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| IKBADNFK_63 | 54742 | 54936 | CspR | 9.32e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| IKBADNFK_63 | 54742 | 54939 | CspA | 1.43e-29 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IKBADNFK_116 | 5879 | 6808 | rep28 | 930 / 930 | 99.68 | CP003162 |
| IKBADNFK_137 | 1182 | 2138 | repUS64 | 959 / 954 | 84.36 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IKBADNFK_1 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_2 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_3 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_4 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_5 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_6 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_7 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_8 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_9 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_10 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_11 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_13 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_14 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_15 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_16 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_17 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_18 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_19 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_20 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_21 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_22 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_23 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_33 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_44 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_55 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_58 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_59 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_60 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_61 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_62 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_63 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_64 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_65 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_66 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_67 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_68 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_69 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_70 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_71 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_72 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_73 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_74 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_75 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_76 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_77 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_78 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_79 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_80 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_81 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_82 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_83 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_84 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_85 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_86 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_87 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_88 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_89 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_90 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_91 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_92 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_93 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_94 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_95 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_96 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_97 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_98 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_99 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_100 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_101 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_102 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_103 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_104 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_105 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_106 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_107 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_108 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_109 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_110 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_111 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_112 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_113 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_114 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_115 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_116 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_117 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_118 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_119 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_120 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_121 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_122 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_123 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_124 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_125 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_126 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_127 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_128 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_129 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_130 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_131 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_132 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_133 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_134 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_135 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_136 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_137 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_139 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_140 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_141 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_142 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_143 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_144 | 0.0 | 1.0 | 0.0 |
| IKBADNFK_145 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_146 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_147 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_148 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_149 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_150 | 1.0 | 0.0 | 1.0 |
| IKBADNFK_151 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IKBADNFK_11 | 64897 | 92131 | False | Siphoviridae | VOG0753, VOG4615, VOG9998, VOG0254, VOG10957, VOG4599, VOG4605, VOG0083, VOG0660, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG0202, VOG1886, VOG4581, VOG4841, VOG0198, VOG3643 |
| IKBADNFK_73 | 5923 | 26658 | False | Siphoviridae | VOG4844, VOG4556, VOG4573, VOG4553, VOG0562, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG6163, VOG0801, VOG4619, VOG3498, VOG9997, VOG8917, VOG9888 |
| IKBADNFK_84 | 12182 | 17697 | False | Siphoviridae | VOG4556, VOG4544, VOG4581, VOG4841, VOG0205 |
Phigaro v2.4.0 (Database: Jan. 2024 release)