Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DHAIECOA_5 | 29702 | 28998 | WalR | 1.46e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| DHAIECOA_14 | 50347 | 50150 | CspR | 4.13e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DHAIECOA_1 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_2 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_3 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_4 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_5 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_6 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_7 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_8 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_9 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_10 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_11 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_12 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_13 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_14 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_15 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_17 | 0.0 | 1.0 | 0.0 |
| DHAIECOA_18 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DHAIECOA_3 | 112335 | 142773 | False | Siphoviridae | VOG0226, VOG4841, VOG0195, VOG4581, VOG1886, VOG0202, VOG4556, VOG4568, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG6163, VOG4605, VOG4599, VOG6455, VOG7896, VOG0753, VOG0703, VOG8294, VOG5633, VOG9667, VOG0275, VOG2820 |
| DHAIECOA_14 | 489 | 19652 | False | Siphoviridae | VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1887, VOG3434, VOG4555, VOG1183, VOG1300, VOG5616, VOG4564, VOG0720, VOG4544, VOG0796, VOG10764, VOG4570, VOG1315, VOG0198, VOG1563 |
| DHAIECOA_14 | 20621 | 28168 | False | Unknown | VOG3643, VOG0152, VOG4567, VOG4693, VOG6623, VOG0189, VOG4855, VOG0186, VOG1309 |
| DHAIECOA_15 | 1 | 31620 | False | Siphoviridae | VOG4605, VOG6163, VOG5852, VOG4586, VOG0704, VOG0539, VOG4589, VOG0562, VOG4553, VOG4573, VOG4556, VOG4844, VOG6947, VOG4549, VOG10904, VOG4570, VOG3477, VOG0198, VOG3307, VOG5317, VOG5280, VOG0982, VOG0189, VOG4799, VOG10867, VOG0181, VOG10059, VOG3459, VOG3711, VOG4552, VOG6495, VOG4602 |
| DHAIECOA_17 | 5124 | 26863 | False | Siphoviridae | VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG9975, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG1345, VOG4549, VOG4570, VOG9741, VOG0198, VOG10489, VOG0047, VOG0982, VOG0189, VOG4799, VOG10867, VOG0181, VOG0707, VOG10059, VOG3622 |
| DHAIECOA_18 | 150132 | 160385 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632 |
Phigaro v2.4.0 (Database: Jan. 2024 release)